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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00286
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-41
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.89 | 80.0 | 5.76e-01 | 100.0% | 43.6% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.89 | 79.0 | 6.02e-01 | 100.0% | 47.3% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.89 | 78.0 | 6.22e-01 | 100.0% | 59.3% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 76.0 | 5.70e-01 | 100.0% | 46.5% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.86 | 75.0 | 6.65e-01 | 100.0% | 71.2% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 72.0 | 6.23e-01 | 97.6% | 80.0% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.85 | 66.0 | 6.00e-01 | 85.4% | 64.8% |
| 4uelA02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 73.0 | 6.11e-01 | 100.0% | 56.9% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 73.0 | 6.33e-01 | 100.0% | 69.8% |
| 4a4kA01 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.83 | 63.0 | 4.48e-01 | 100.0% | 30.1% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.82 | 71.0 | 4.87e-01 | 100.0% | 30.9% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.81 | 67.0 | 4.64e-01 | 95.1% | 30.7% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 66.0 | 5.02e-01 | 100.0% | 42.1% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.78 | 67.0 | 5.37e-01 | 100.0% | 76.5% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 64.0 | 6.09e-01 | 95.1% | 93.9% |
| 3eslA02 | 1.25.40.930 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.75 | 62.0 | 4.56e-01 | 100.0% | 36.1% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 62.0 | 3.91e-01 | 100.0% | 17.6% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.74 | 62.0 | 5.73e-01 | 100.0% | 75.4% |
| 2py5A04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.70 | 52.0 | 5.39e-01 | 82.9% | 94.4% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.69 | 56.0 | 4.68e-01 | 100.0% | 76.8% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.67 | 51.0 | 4.45e-01 | 95.1% | 89.2% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.66 | 48.0 | 3.53e-01 | 78.0% | 38.3% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 50.0 | 4.45e-01 | 100.0% | 56.8% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.64 | 49.0 | 4.21e-01 | 97.6% | 50.6% |
| 1eljA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 47.0 | 3.06e-01 | 80.5% | 19.5% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.62 | 47.0 | 4.51e-01 | 100.0% | 78.2% |
| 7a0hA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.60 | 52.0 | 3.87e-01 | 95.1% | 43.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287592 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.95 | 87.0 | 8.12e-01 | 100.0% | 90.0% |
| 3633123 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.94 | 87.0 | 6.07e-01 | 100.0% | 36.5% |
| 58691 | 4177.1.1.3 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin | 0.91 | 82.0 | 5.65e-01 | 100.0% | 32.0% |
| 3571073 | 633.12.1.11 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › TRP_2 | 0.91 | 81.0 | 6.10e-01 | 100.0% | 43.2% |
| 3841317 | 605.1.1.337 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TRP_2 | 0.91 | 81.0 | 5.70e-01 | 100.0% | 34.2% |
| 2663455 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.89 | 78.0 | 6.60e-01 | 100.0% | 60.3% |
| 3725456 | 604.3.1.24 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF27980 | 0.89 | 77.0 | 6.05e-01 | 100.0% | 52.9% |
| 3655782 | 101.1.2.598 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD | 0.89 | 78.0 | 4.58e-01 | 100.0% | 13.3% |
| 3468223 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.88 | 78.0 | 4.51e-01 | 100.0% | 11.9% |
| 4206858 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.87 | 75.0 | 5.42e-01 | 100.0% | 39.1% |
| 3194542 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.87 | 74.0 | 4.10e-01 | 100.0% | 7.8% |
| 4378 | 4359.1.1.1 ↗ | alpha duplicates or obligate multimers › YfbU-like, N-terminal subdomain › YfbU-like, N-terminal subdomain › YfbU-like, N-terminal subdomain › YfbU | 0.84 | 65.0 | 5.91e-01 | 85.4% | 63.6% |
| 4016287 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.83 | 72.0 | 4.72e-01 | 100.0% | 45.1% |
| 4530714 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.82 | 68.0 | 6.52e-01 | 100.0% | 90.0% |
| 5046220 | 3493.1.1.0 ↗ | extended segments › Photosystem II PsbX protein › Photosystem II PsbX protein › Photosystem II PsbX protein | 0.79 | 66.0 | 6.45e-01 | 100.0% | 86.7% |
| 4988269 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.78 | 67.0 | 5.19e-01 | 100.0% | 97.9% |
| 3209183 | 192.31.1.0 ↗ | alpha bundles › Long alpha-hairpin › CP12 › CP12 | 0.76 | 65.0 | 6.39e-01 | 100.0% | 95.6% |
| 3405837 | 3652.1.1.0 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 | 0.73 | 57.0 | 5.82e-01 | 92.7% | 100.0% |
| 3216621 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.73 | 63.0 | 4.57e-01 | 100.0% | 35.0% |
| 3268640 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 54.0 | 4.79e-01 | 90.2% | 55.0% |
| 4595410 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.67 | 59.0 | 5.06e-01 | 100.0% | 72.3% |
| 3213894 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.65 | 56.0 | 4.68e-01 | 100.0% | 61.3% |
| 4933491 | 3997.1.1.1 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.63 | 56.0 | 3.63e-01 | 100.0% | 31.1% |
| 3875402 | 109.4.1.1557 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_RNF123 | 0.61 | 46.0 | 2.52e-01 | 100.0% | 4.4% |