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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00300

Bact-Vir

SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00300

Identity

Kingdom:
phage

Quality

71.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 108-231
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.76 71.0 6.41e-01 100.0% 80.9%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 70.0 6.41e-01 100.0% 81.9%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 70.0 6.54e-01 100.0% 87.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.74 69.0 6.36e-01 100.0% 80.1%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.73 68.0 6.38e-01 100.0% 87.1%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 52.0 5.24e-01 100.0% 75.8%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 35.0 4.26e-01 84.7% 79.5%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 38.0 4.34e-01 96.0% 76.7%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.66 46.0 5.05e-01 97.6% 88.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 38.0 4.33e-01 81.5% 77.8%
1ntpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 4.57e-01 100.0% 80.6%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 35.0 3.92e-01 77.4% 69.5%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 39.0 4.51e-01 85.5% 87.5%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 44.0 4.68e-01 100.0% 84.1%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 44.0 4.57e-01 100.0% 79.6%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 44.0 4.57e-01 100.0% 80.4%
1cwvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 3.99e-01 88.7% 71.6%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 40.0 4.40e-01 91.9% 82.4%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 41.0 4.42e-01 100.0% 80.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 49.0 4.53e-01 100.0% 68.6%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 39.0 4.04e-01 100.0% 70.8%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 41.0 4.36e-01 100.0% 80.4%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 44.0 4.50e-01 100.0% 81.4%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 43.0 4.43e-01 100.0% 82.1%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.58 36.0 3.91e-01 90.3% 72.6%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 38.0 4.04e-01 100.0% 78.1%
2r0lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 4.25e-01 100.0% 81.4%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.57 35.0 3.34e-01 100.0% 51.7%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.56 35.0 4.09e-01 71.8% 93.8%
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 33.0 3.77e-01 79.8% 80.0%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 38.0 4.13e-01 100.0% 85.4%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.55 50.0 4.18e-01 100.0% 78.1%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.54 37.0 3.94e-01 87.9% 80.4%
5do8B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 31.0 3.85e-01 98.4% 92.2%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 21.0 3.28e-01 76.6% 95.7%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.53 33.0 3.70e-01 81.5% 80.9%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.53 41.0 4.09e-01 80.6% 94.4%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.52 46.0 4.59e-01 100.0% 95.2%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.51e-01 88.7% 69.0%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 33.0 3.65e-01 88.7% 80.6%
1nyrB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 45.0 4.29e-01 97.6% 92.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 36.0 3.29e-01 71.8% 74.7%
6y1zA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 44.0 3.69e-01 96.8% 83.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995819 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.91 88.0 8.11e-01 100.0% 96.7%
2101663 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.89 86.0 7.68e-01 100.0% 87.7%
3581358 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.88 85.0 7.71e-01 100.0% 88.4%
4995820 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.86 83.0 8.13e-01 100.0% 97.7%
4140243 1.1.5.82 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.84 69.0 7.17e-01 100.0% 91.3%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.83 79.0 7.38e-01 100.0% 89.9%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.83 79.0 7.25e-01 100.0% 91.5%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.83 79.0 7.46e-01 100.0% 88.3%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.82 78.0 7.45e-01 100.0% 90.8%
2471641 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.82 78.0 7.29e-01 100.0% 85.2%
3096576 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 77.0 6.94e-01 100.0% 85.5%
3944178 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 68.0 7.04e-01 99.2% 95.7%
3023894 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 75.0 7.03e-01 100.0% 91.9%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.79 68.0 6.81e-01 100.0% 89.0%
3966479 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 74.0 6.62e-01 100.0% 89.7%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.77 72.0 6.67e-01 100.0% 85.2%
5004308 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 71.0 6.59e-01 100.0% 91.0%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 72.0 6.52e-01 100.0% 94.4%
136185 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.76 71.0 6.41e-01 100.0% 80.9%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.76 68.0 5.09e-01 100.0% 43.0%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.76 70.0 6.42e-01 100.0% 81.9%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 71.0 5.35e-01 100.0% 48.1%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.75 70.0 6.48e-01 100.0% 81.9%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.38e-01 100.0% 96.9%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.74 70.0 6.69e-01 100.0% 87.9%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 68.0 6.02e-01 100.0% 80.6%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 68.0 5.93e-01 100.0% 82.8%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 66.0 6.41e-01 100.0% 88.1%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 66.0 6.65e-01 100.0% 97.6%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.70 65.0 6.06e-01 98.4% 97.3%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.70 63.0 6.19e-01 98.4% 100.0%
3457753 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.64 41.0 4.30e-01 85.5% 70.9%
3964308 1.1.13.37 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 0.64 57.0 5.59e-01 97.6% 92.6%
3787199 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.64 40.0 4.44e-01 86.3% 81.1%
4927015 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 32.0 3.89e-01 78.2% 73.8%
4933494 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 39.0 4.36e-01 89.5% 81.1%
3188329 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.62 40.0 4.63e-01 97.6% 90.0%
3591908 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 4.81e-01 96.0% 81.1%
3978576 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 45.0 4.80e-01 96.0% 88.2%
4962586 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.60 33.0 3.86e-01 80.6% 77.1%
4120984 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.59 41.0 4.32e-01 72.6% 100.0%
4506614 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.59 35.0 3.77e-01 89.5% 67.9%
4027705 1.1.7.47 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.57 51.0 4.91e-01 100.0% 86.9%
3921684 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.56 38.0 3.28e-01 86.3% 43.4%
4961623 304.8.1.115 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › T2SSM_b 0.56 32.0 3.69e-01 83.1% 76.7%
3966231 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.56 35.0 3.74e-01 96.8% 70.9%
4141632 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.56 35.0 3.88e-01 84.7% 80.0%
3860815 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 43.0 3.33e-01 100.0% 36.7%
4988150 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 33.0 3.55e-01 100.0% 68.6%
4121888 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.55 34.0 3.87e-01 82.3% 83.3%
3542615 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.55 33.0 3.67e-01 100.0% 76.8%
3950626 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.55 41.0 3.42e-01 80.6% 59.1%
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.54 48.0 4.79e-01 97.6% 95.2%
4379611 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 41.0 3.41e-01 80.6% 61.7%
3710176 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 44.0 3.17e-01 100.0% 31.5%
3680900 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 37.0 3.75e-01 91.9% 70.8%
3647596 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.51 40.0 3.66e-01 83.9% 74.1%
4381193 304.55.1.6 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL 0.51 41.0 3.55e-01 85.5% 82.1%
D2 medium residues 1-99
PDB