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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00331

Bact-Vir

SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00331

Identity

Kingdom:
phage

Quality

62.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 161-329
PDB
Domain cluster: rep: CG_2015-01t_scaffold_8_prodigal-single.1__X__X__00115__D136-282
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 30.0 3.79e-01 79.3% 82.2%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 32.0 3.94e-01 84.6% 94.0%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 30.0 3.67e-01 82.2% 85.8%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.52 24.0 3.32e-01 72.8% 95.7%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 28.0 3.58e-01 81.1% 92.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935976 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.54 32.0 3.73e-01 84.0% 84.3%
4951600 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.53 31.0 3.58e-01 84.0% 76.8%
4989327 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.53 31.0 3.51e-01 84.0% 74.6%
5004518 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.53 25.0 3.57e-01 74.6% 100.0%
5075048 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.52 31.0 3.50e-01 84.6% 76.8%