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SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00344
Bact-VirSR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00344
Identity
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 458-551
Domain cluster:
rep: S27_BME27_1069154_prodigal-single.1__X__X__00299__D30-118
D2
high
residues 660-790
Domain cluster:
rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.77 | 61.0 | 6.53e-01 | 100.0% | 95.6% |
| 6cl5A01 | 2.60.40.3940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 41.0 | 4.54e-01 | 99.2% | 79.4% |
| 2vzsA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 40.0 | 4.11e-01 | 99.2% | 65.9% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 46.0 | 4.45e-01 | 75.6% | 100.0% |
| 2osxA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 33.0 | 3.78e-01 | 97.7% | 66.7% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 36.0 | 4.23e-01 | 97.7% | 82.0% |
| 2f1vA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 46.0 | 4.16e-01 | 77.1% | 98.4% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.61 | 45.0 | 3.67e-01 | 77.1% | 99.2% |
| 2h6oA01 | 2.60.40.2800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 53.0 | 5.16e-01 | 100.0% | 85.9% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.60 | 52.0 | 4.08e-01 | 93.9% | 96.4% |
| 2mizA00 | 2.60.40.2900 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 51.0 | 4.81e-01 | 100.0% | 77.6% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 43.0 | 3.81e-01 | 96.2% | 50.0% |
| 4nn5C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 35.0 | 3.94e-01 | 100.0% | 75.8% |
| 1g0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.48e-01 | 100.0% | 85.5% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.59 | 44.0 | 3.54e-01 | 77.9% | 93.2% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.59 | 49.0 | 3.86e-01 | 88.5% | 98.9% |
| 3isrA02 | 2.60.40.2250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 35.0 | 3.90e-01 | 99.2% | 75.0% |
| 2xq0A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.59 | 35.0 | 3.19e-01 | 100.0% | 42.5% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.59 | 42.0 | 4.07e-01 | 98.5% | 66.0% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.58 | 42.0 | 4.13e-01 | 99.2% | 69.8% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.58 | 52.0 | 4.17e-01 | 98.5% | 79.4% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 4.32e-01 | 100.0% | 83.3% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 31.0 | 3.97e-01 | 96.9% | 100.0% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.57 | 44.0 | 4.44e-01 | 100.0% | 80.2% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 45.0 | 3.76e-01 | 83.2% | 91.4% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.56 | 39.0 | 4.13e-01 | 72.5% | 100.0% |
| 1lwuC01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.55 | 41.0 | 3.92e-01 | 98.5% | 67.5% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 43.0 | 3.54e-01 | 83.2% | 90.2% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.54 | 42.0 | 3.84e-01 | 82.4% | 98.3% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 43.0 | 3.50e-01 | 83.2% | 90.4% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 43.0 | 3.91e-01 | 84.0% | 87.2% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 49.0 | 3.87e-01 | 100.0% | 64.8% |
| 1m1jE01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.54 | 42.0 | 3.96e-01 | 98.5% | 68.4% |
| 3hlkA01 | 2.60.40.2240 | Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain | 0.53 | 42.0 | 4.19e-01 | 98.5% | 80.7% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.52 | 42.0 | 4.44e-01 | 99.2% | 99.1% |
| 4ktpA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 37.0 | 3.05e-01 | 76.3% | 53.2% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 45.0 | 3.85e-01 | 100.0% | 71.7% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.50 | 42.0 | 3.61e-01 | 89.3% | 76.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4162922 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 54.0 | 4.13e-01 | 93.1% | 95.8% |
| 4191031 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.63 | 54.0 | 4.11e-01 | 93.1% | 95.8% |
| 3603165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 41.0 | 4.36e-01 | 91.6% | 73.9% |
| 5003848 | 221.11.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in probable beta-lactamase › beta-grasp fold domain in probable beta-lactamase | 0.62 | 37.0 | 4.52e-01 | 94.7% | 96.2% |
| 3387574 | 5084.3.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter | 0.60 | 52.0 | 3.99e-01 | 94.7% | 97.1% |
| 3386238 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.60 | 52.0 | 3.96e-01 | 95.4% | 95.6% |
| 3928426 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.60 | 54.0 | 4.43e-01 | 97.7% | 74.9% |
| 885 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.60 | 52.0 | 4.08e-01 | 93.9% | 96.4% |
| 3623256 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.60 | 53.0 | 4.53e-01 | 98.5% | 74.9% |
| 3974567 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.60 | 45.0 | 3.57e-01 | 78.6% | 95.1% |
| 4038477 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.59 | 51.0 | 3.90e-01 | 94.7% | 95.9% |
| 3952750 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.58 | 34.0 | 3.81e-01 | 99.2% | 75.0% |
| 3257660 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 42.0 | 4.31e-01 | 100.0% | 79.2% |
| 3507385 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.57 | 51.0 | 4.38e-01 | 98.5% | 83.3% |
| 4966673 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 39.0 | 4.27e-01 | 100.0% | 87.6% |
| 139764 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.57 | 49.0 | 3.88e-01 | 93.9% | 94.1% |
| 3974124 | 5084.1.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg | 0.57 | 49.0 | 3.87e-01 | 94.7% | 98.9% |
| 3599776 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 47.0 | 4.95e-01 | 100.0% | 96.6% |
| 5033004 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 4.23e-01 | 100.0% | 80.0% |
| 4027566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 38.0 | 3.69e-01 | 70.2% | 100.0% |
| 4929805 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.26e-01 | 99.2% | 69.4% |
| 3251206 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 3.79e-01 | 98.5% | 69.6% |
| 3662305 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 35.0 | 2.54e-01 | 74.0% | 22.9% |
| 3228027 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.55 | 48.0 | 4.97e-01 | 99.2% | 100.0% |
| 3320333 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.88e-01 | 100.0% | 62.9% |
| 3225961 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.54 | 48.0 | 4.83e-01 | 100.0% | 96.9% |
| 3963175 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.53 | 41.0 | 3.69e-01 | 81.7% | 88.1% |
| 3849839 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 37.0 | 4.15e-01 | 71.8% | 100.0% |
| 2420836 | 10.9.1.0 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin | 0.53 | 35.0 | 3.74e-01 | 91.6% | 77.9% |
| 5073672 | 4252.1.1.7 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl | 0.52 | 40.0 | 3.62e-01 | 81.7% | 94.6% |
| 3445617 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.52 | 47.0 | 4.73e-01 | 99.2% | 99.3% |
| 3222541 | 4252.1.1.15 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30558 | 0.52 | 40.0 | 3.39e-01 | 82.4% | 93.8% |
| 5071561 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.52 | 40.0 | 3.69e-01 | 81.7% | 95.3% |
| 3420481 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 39.0 | 3.67e-01 | 80.2% | 74.5% |
| 4959177 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.52 | 40.0 | 3.63e-01 | 81.7% | 99.4% |
| 3734952 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.51 | 41.0 | 3.75e-01 | 87.8% | 92.4% |
| 3281898 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.51 | 37.0 | 2.93e-01 | 74.0% | 52.0% |
| 3442168 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 47.0 | 4.61e-01 | 100.0% | 96.4% |
| 3956583 | 4252.1.1.7 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl | 0.51 | 41.0 | 3.79e-01 | 87.0% | 97.1% |
| 4128674 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.51 | 39.0 | 3.40e-01 | 82.4% | 89.3% |
| 4294796 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.51 | 38.0 | 3.57e-01 | 80.2% | 99.4% |
| 3249431 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 46.0 | 4.58e-01 | 99.2% | 98.5% |
| 4465334 | 4252.1.1.7 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl | 0.50 | 42.0 | 3.52e-01 | 90.8% | 100.0% |
| 4606000 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.50 | 38.0 | 3.33e-01 | 81.7% | 86.0% |
| 3839826 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.50 | 41.0 | 3.02e-01 | 90.8% | 68.6% |
| 3280720 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.50 | 41.0 | 3.71e-01 | 87.0% | 97.1% |
D3
medium
residues 172-273
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 63.0 | 6.77e-01 | 100.0% | 97.8% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 60.0 | 6.26e-01 | 97.1% | 98.9% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 60.0 | 5.94e-01 | 98.0% | 87.2% |
| 7rpyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 4.28e-01 | 96.1% | 85.4% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 40.0 | 3.24e-01 | 81.4% | 65.0% |
| 4jguA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.08e-01 | 88.2% | 57.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.69 | 60.0 | 5.94e-01 | 98.0% | 87.2% |
| 3417865 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.57 | 44.0 | 4.29e-01 | 80.4% | 100.0% |
| 3836258 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 43.0 | 4.34e-01 | 81.4% | 90.5% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 43.0 | 4.12e-01 | 80.4% | 78.3% |
| 3431148 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 41.0 | 3.98e-01 | 79.4% | 91.2% |
| 4383595 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.87e-01 | 84.3% | 73.9% |
| 4063416 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.51 | 43.0 | 4.01e-01 | 92.2% | 72.3% |
| 4591487 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 32.0 | 3.53e-01 | 85.3% | 81.2% |