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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00021

Bact-Vir

SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00021

Identity

Kingdom:
phage

Quality

91.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-88
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.35e-01 96.4% 69.4%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.72 58.0 6.15e-01 100.0% 98.7%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 5.52e-01 98.8% 95.5%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.69 54.0 5.81e-01 95.2% 100.0%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.16e-01 95.2% 80.5%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.16e-01 97.6% 81.0%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.68e-01 100.0% 85.7%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 5.22e-01 100.0% 80.0%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.20e-01 97.6% 75.5%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.27e-01 97.6% 86.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.94e-01 100.0% 70.5%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 39.0 4.26e-01 94.0% 72.5%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.81e-01 95.2% 71.9%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.33e-01 98.8% 89.3%
2ebiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 4.66e-01 71.4% 86.4%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.58e-01 100.0% 100.0%
5lslA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 34.0 3.56e-01 98.8% 55.7%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 48.0 3.48e-01 92.9% 84.7%
4m3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 45.0 3.70e-01 97.6% 44.0%
2fckA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 46.0 3.69e-01 100.0% 42.2%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 3.56e-01 97.6% 41.4%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.57 47.0 4.53e-01 94.0% 83.7%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 3.40e-01 97.6% 40.6%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.76e-01 94.0% 98.1%
5h02A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.40e-01 97.6% 40.4%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.79e-01 97.6% 99.4%
1g8aA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 3.44e-01 91.7% 41.5%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.87e-01 97.6% 99.3%
2zpaA03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.48e-01 95.2% 90.7%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 45.0 3.71e-01 95.2% 98.1%
1yreC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 45.0 3.62e-01 97.6% 89.0%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 45.0 3.66e-01 97.6% 96.4%
1vhsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.65e-01 97.6% 98.8%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.59e-01 100.0% 96.7%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.28e-01 94.0% 53.3%
2z0zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 44.0 3.43e-01 97.6% 85.1%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.51 40.0 4.09e-01 86.9% 96.4%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.55e-01 98.8% 100.0%
7oocE01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.51 32.0 3.23e-01 95.2% 62.4%
3pzjB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.44e-01 98.8% 89.1%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 42.0 2.81e-01 94.0% 35.2%
4i5lB01 1.10.238.230 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.50 35.0 3.33e-01 100.0% 61.0%
2yx1A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 38.0 3.04e-01 97.6% 38.9%
5eovA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 3.16e-01 92.9% 42.0%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057473 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.79 61.0 6.45e-01 100.0% 92.0%
5016964 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 60.0 6.51e-01 98.8% 97.1%
5037171 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.78 61.0 6.25e-01 100.0% 87.3%
3604595 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.78 60.0 6.16e-01 100.0% 87.3%
5071474 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.77 58.0 5.99e-01 98.8% 85.0%
5012833 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 6.08e-01 98.8% 94.3%
4942782 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.76 58.0 5.96e-01 100.0% 86.1%
4956461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 61.0 6.14e-01 100.0% 86.7%
3606219 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 6.41e-01 97.6% 100.0%
4936458 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 57.0 6.03e-01 100.0% 90.7%
5058886 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 57.0 6.15e-01 100.0% 98.6%
3550852 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.73 56.0 5.32e-01 96.4% 68.0%
5055754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.12e-01 100.0% 63.8%
3221809 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 49.0 5.64e-01 95.2% 98.3%
3505845 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.72 57.0 5.43e-01 96.4% 72.0%
3620820 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 4.56e-01 96.4% 47.6%
3805545 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.71 65.0 5.56e-01 100.0% 73.8%
3275982 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.71 60.0 4.54e-01 100.0% 38.5%
3354924 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.71 55.0 3.75e-01 100.0% 23.3%
3772634 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.71 54.0 5.57e-01 100.0% 87.5%
3167236 148.1.3.31 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.71 58.0 5.86e-01 100.0% 88.2%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.71 60.0 4.38e-01 100.0% 34.7%
4157944 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.70 58.0 6.04e-01 98.8% 100.0%
3228509 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.70 61.0 5.21e-01 100.0% 60.0%
5078008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.58e-01 100.0% 92.0%
3932128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.04e-01 100.0% 57.1%
3645442 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.70 54.0 5.41e-01 100.0% 82.4%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.69 47.0 5.00e-01 100.0% 80.0%
3637467 101.1.2.74 alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.69 62.0 5.79e-01 100.0% 86.4%
3357833 101.1.2.509 alpha arrays › HTH › HTH › winged helix domain › PF25879 0.68 54.0 5.57e-01 100.0% 91.3%
4304578 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.60e-01 97.6% 96.0%
3988923 101.1.2.158 alpha arrays › HTH › HTH › winged helix domain › DpnI_C 0.67 53.0 5.62e-01 100.0% 97.3%
3369751 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.67 54.0 3.64e-01 100.0% 22.8%
3487887 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.65e-01 97.6% 57.6%
3484758 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.67 56.0 4.52e-01 97.6% 48.1%
5045747 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 50.0 4.96e-01 90.5% 75.6%
5044353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 4.95e-01 95.2% 71.0%
3608958 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 5.13e-01 95.2% 86.7%
3937499 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.66 53.0 4.38e-01 97.6% 48.7%
4025053 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.66 59.0 5.69e-01 100.0% 91.6%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 48.0 4.59e-01 90.5% 65.0%
None 0.66 55.0 5.41e-01 97.6% 85.6%
3675805 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.66 49.0 4.42e-01 94.0% 57.4%
3688689 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.66 54.0 4.72e-01 100.0% 58.5%
3389142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.44e-01 100.0% 89.4%
4974161 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 56.0 4.98e-01 96.4% 64.5%
3617979 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 5.13e-01 98.8% 90.7%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.66 56.0 5.18e-01 95.2% 73.6%
4996226 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.66 50.0 4.79e-01 96.4% 70.0%
3602953 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.22e-01 94.0% 97.1%
4513524 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 51.0 4.29e-01 97.6% 49.7%
3205448 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.65 51.0 4.83e-01 100.0% 70.5%
3651772 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.65 53.0 3.53e-01 100.0% 22.0%
3341504 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.65 49.0 4.80e-01 96.4% 76.7%
4972556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.59e-01 96.4% 95.3%
3784212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.24e-01 100.0% 77.1%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 55.0 5.06e-01 95.2% 72.7%
4969210 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 52.0 5.04e-01 100.0% 77.9%
3237013 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.64 55.0 4.79e-01 97.6% 62.3%
4943074 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.64 52.0 4.39e-01 100.0% 51.3%
5013924 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 54.0 5.27e-01 100.0% 85.6%
3264027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 5.54e-01 100.0% 91.1%
3797700 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 5.18e-01 97.6% 81.0%
3167816 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 5.22e-01 97.6% 85.6%
5010374 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 5.29e-01 100.0% 85.3%
3895552 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.63 53.0 4.65e-01 97.6% 60.8%
4082319 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.63 53.0 4.59e-01 97.6% 60.0%
3583168 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.63 50.0 4.68e-01 97.6% 68.2%
4996559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 5.25e-01 96.4% 100.0%
4961270 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 53.0 4.96e-01 95.2% 77.1%
3347818 101.1.2.529 alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.62 50.0 5.20e-01 95.2% 98.7%
3263199 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.62 36.0 3.26e-01 97.6% 44.5%
4831403 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.61 52.0 5.30e-01 100.0% 98.8%
None 0.61 50.0 4.81e-01 96.4% 78.0%
3738672 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.96e-01 98.8% 87.8%
5029778 101.1.2.43 alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.60 50.0 4.93e-01 98.8% 86.7%
3434686 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.59 49.0 4.45e-01 98.8% 65.8%
3857154 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.59 50.0 4.51e-01 100.0% 67.5%
4011084 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.59 52.0 3.69e-01 100.0% 83.8%
4299845 2003.1.5.48 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NodS 0.56 46.0 3.51e-01 96.4% 37.1%
3735781 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.56 48.0 3.84e-01 100.0% 78.7%
3439866 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.54 46.0 3.93e-01 100.0% 56.6%
1296914 213.1.1.26 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_4 0.54 45.0 3.80e-01 97.6% 98.1%
4012668 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 47.0 3.99e-01 100.0% 91.7%
3726815 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.53 46.0 3.94e-01 100.0% 90.3%