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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00028

Bact-Vir

SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00028

Identity

Kingdom:
phage

Quality

77.3 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-16_37-99
PDB
Domain cluster: rep: MG752970.1__AVH85358.1__RsoM2USA_430__00430__D11-89
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00166.27 best Cpn10 28.0 2.50e-06 97.2% 61.3%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g31A00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.79 74.0 6.35e-01 100.0% 89.7%
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.77 72.0 6.39e-01 100.0% 88.8%
6mrc100 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.76 71.0 6.29e-01 100.0% 86.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 33.0 3.43e-01 77.8% 58.8%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.02e-01 87.5% 75.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 37.0 3.88e-01 87.5% 73.4%
2dgmA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 42.0 2.87e-01 87.5% 74.5%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 4.20e-01 87.5% 94.4%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.63e-01 81.9% 68.8%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 2.60e-01 70.8% 88.2%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 38.0 3.69e-01 98.6% 73.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4182470 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.83 78.0 7.03e-01 100.0% 90.4%
4147631 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.82 73.0 7.18e-01 100.0% 89.3%
3359945 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.80 76.0 6.71e-01 100.0% 82.5%
4417276 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 75.0 6.58e-01 100.0% 92.0%
3674955 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 69.0 6.64e-01 98.6% 82.5%
4029028 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 75.0 6.55e-01 100.0% 87.0%
4173931 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.79 74.0 6.62e-01 100.0% 90.5%
4082853 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 74.0 6.65e-01 100.0% 90.4%
4341607 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 73.0 6.50e-01 100.0% 87.8%
3594024 236.1.2.0 ↗ beta barrels › GroES-like › GroES-related › GroES 0.78 73.0 6.73e-01 100.0% 90.0%
3938500 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 71.0 6.55e-01 97.2% 93.3%
4378688 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.78 73.0 6.55e-01 100.0% 90.5%
3252896 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.76 71.0 6.42e-01 100.0% 92.6%
2794379 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.75 68.0 6.18e-01 100.0% 85.3%
2794380 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.74 68.0 6.19e-01 100.0% 88.2%
4024554 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.73 67.0 6.01e-01 100.0% 90.8%
3191619 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.66 60.0 4.38e-01 100.0% 52.1%
4017490 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.61 55.0 4.07e-01 100.0% 52.6%
3286331 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.61 54.0 5.20e-01 95.8% 100.0%
3274727 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.60 52.0 3.99e-01 93.1% 72.7%
3893747 2.3.1.2 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.59 54.0 4.23e-01 100.0% 51.3%
4039724 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 41.0 4.32e-01 95.8% 84.6%
4049910 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.56 29.0 3.57e-01 77.8% 80.0%
4420797 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 48.0 4.58e-01 93.1% 96.5%
3896549 4004.1.1.5 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc 0.54 41.0 3.34e-01 87.5% 43.7%
3833003 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.01e-01 84.7% 78.8%
3212056 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.14e-01 87.5% 88.7%
3629514 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.03e-01 87.5% 77.5%
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 41.0 4.42e-01 87.5% 96.8%
3582421 2.1.1.249 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_2nd 0.52 41.0 3.15e-01 87.5% 37.6%