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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00072
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00072
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zxjA01 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.86 | 63.0 | 4.21e-01 | 76.8% | 63.8% |
| 2np5D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.81 | 64.0 | 4.56e-01 | 85.7% | 30.4% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.79 | 55.0 | 4.72e-01 | 73.2% | 48.8% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 49.0 | 5.12e-01 | 73.2% | 70.6% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 51.0 | 3.81e-01 | 83.9% | 33.3% |
| 3bvoA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.66 | 49.0 | 4.28e-01 | 80.4% | 52.3% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 50.0 | 3.44e-01 | 82.1% | 23.6% |
| 8amqA02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 51.0 | 3.13e-01 | 91.1% | 45.2% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.64 | 52.0 | 3.77e-01 | 91.1% | 75.0% |
| 4jvtA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.64 | 41.0 | 4.69e-01 | 73.2% | 90.2% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 48.0 | 4.63e-01 | 82.1% | 82.3% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.62 | 47.0 | 3.11e-01 | 98.2% | 18.8% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 48.0 | 3.83e-01 | 91.1% | 52.2% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.58 | 51.0 | 3.78e-01 | 94.6% | 45.9% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.58 | 45.0 | 4.15e-01 | 85.7% | 64.9% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 47.0 | 3.33e-01 | 92.9% | 81.7% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 50.0 | 3.94e-01 | 100.0% | 82.8% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.56 | 41.0 | 4.02e-01 | 82.1% | 89.1% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.53 | 38.0 | 3.60e-01 | 83.9% | 100.0% |
| 3pdiA02 | 3.40.50.12380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal | 0.52 | 41.0 | 2.68e-01 | 91.1% | 57.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3288703 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.75 | 53.0 | 3.82e-01 | 75.0% | 98.7% |
| 3939205 | 3729.1.1.0 ↗ | alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain | 0.74 | 54.0 | 4.01e-01 | 76.8% | 37.0% |
| 4093256 | 2004.1.1.545 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2, AAA_5 | 0.74 | 50.0 | 3.15e-01 | 82.1% | 14.7% |
| 3781313 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.74 | 59.0 | 3.78e-01 | 83.9% | 23.1% |
| 4966860 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.74 | 52.0 | 3.97e-01 | 75.0% | 72.3% |
| 3265748 | 150.1.1.100 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › TMD0_ABC | 0.73 | 56.0 | 3.73e-01 | 80.4% | 58.9% |
| 3219375 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 56.0 | 3.52e-01 | 92.9% | 17.0% |
| 4011306 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 56.0 | 4.81e-01 | 89.3% | 80.0% |
| 4672000 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.69 | 58.0 | 4.08e-01 | 92.9% | 59.4% |
| 3280846 | 5050.1.1.55 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1 | 0.69 | 62.0 | 3.62e-01 | 100.0% | 37.6% |
| 3566571 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.68 | 45.0 | 3.89e-01 | 80.4% | 44.7% |
| 3402232 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.67 | 57.0 | 4.70e-01 | 94.6% | 77.0% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.66 | 50.0 | 4.58e-01 | 82.1% | 66.7% |
| 1647135 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.66 | 49.0 | 4.36e-01 | 80.4% | 57.0% |
| 3897959 | 198.1.1.8 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 | 0.62 | 42.0 | 3.35e-01 | 71.4% | 40.0% |
| 3412881 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.59 | 46.0 | 4.14e-01 | 91.1% | 60.0% |
| 3653641 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.59 | 47.0 | 2.99e-01 | 85.7% | 29.3% |
| 2474880 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.56 | 42.0 | 4.42e-01 | 80.4% | 91.8% |
| 997935 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.54 | 46.0 | 2.73e-01 | 92.9% | 60.1% |
D2
medium
residues 57-111
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 28.2 | 2.30e-06 | 72.7% | 68.1% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.76 | 65.0 | 5.72e-01 | 100.0% | 63.9% |
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.61 | 54.0 | 4.07e-01 | 100.0% | 87.8% |
| 6u4mA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.60 | 39.0 | 3.72e-01 | 92.7% | 55.4% |
| 2uzgA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 43.0 | 3.71e-01 | 100.0% | 46.3% |
| 2cjsC01 | 3.30.60.120 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.59 | 36.0 | 3.93e-01 | 76.4% | 86.8% |
| 1x0tA02 | 6.20.50.20 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.58 | 36.0 | 3.90e-01 | 78.2% | 77.8% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 45.0 | 4.05e-01 | 100.0% | 59.0% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.55 | 45.0 | 3.75e-01 | 96.4% | 53.3% |
| 2anvA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 40.0 | 3.13e-01 | 90.9% | 61.6% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.53 | 38.0 | 3.32e-01 | 81.8% | 53.2% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 42.0 | 3.25e-01 | 90.9% | 64.7% |
| 4j8lA02 | 3.90.1150.130 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 42.0 | 3.47e-01 | 100.0% | 97.4% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 58.0 | 3.90e-01 | 80.0% | 21.6% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 64.0 | 6.47e-01 | 96.4% | 89.1% |
| 3965880 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 68.0 | 5.87e-01 | 100.0% | 80.9% |
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.78 | 70.0 | 5.38e-01 | 100.0% | 59.8% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 67.0 | 5.88e-01 | 100.0% | 63.5% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.78 | 67.0 | 6.07e-01 | 96.4% | 74.7% |
| 3963404 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.78 | 68.0 | 5.72e-01 | 100.0% | 75.8% |
| 3317146 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 68.0 | 5.26e-01 | 100.0% | 57.3% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 69.0 | 6.09e-01 | 100.0% | 75.0% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.77 | 61.0 | 5.68e-01 | 98.2% | 68.6% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.77 | 64.0 | 6.10e-01 | 100.0% | 80.0% |
| 4839754 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 66.0 | 4.83e-01 | 98.2% | 36.2% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 64.0 | 5.36e-01 | 100.0% | 54.3% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 68.0 | 5.69e-01 | 100.0% | 62.1% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 63.0 | 6.01e-01 | 94.5% | 78.5% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.76 | 60.0 | 5.55e-01 | 98.2% | 68.6% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 65.0 | 5.24e-01 | 100.0% | 49.1% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.76 | 67.0 | 5.82e-01 | 100.0% | 69.4% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 63.0 | 5.99e-01 | 98.2% | 81.5% |
| 3440476 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.75 | 65.0 | 5.12e-01 | 100.0% | 59.7% |
| 3952923 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 63.0 | 5.20e-01 | 100.0% | 53.0% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 66.0 | 5.15e-01 | 100.0% | 47.8% |
| 3953059 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 62.0 | 5.37e-01 | 100.0% | 58.9% |
| 3953218 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.74 | 64.0 | 4.65e-01 | 100.0% | 37.4% |
| 3953524 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.74 | 64.0 | 4.66e-01 | 100.0% | 37.4% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.74 | 63.0 | 5.34e-01 | 100.0% | 58.8% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.73 | 64.0 | 5.14e-01 | 100.0% | 50.9% |
| 3952384 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 61.0 | 5.15e-01 | 100.0% | 55.8% |
| 4937899 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.72 | 61.0 | 5.27e-01 | 100.0% | 60.0% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.72 | 59.0 | 5.50e-01 | 98.2% | 72.9% |
| 1684075 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.72 | 60.0 | 4.30e-01 | 94.5% | 46.7% |
| 3481685 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.72 | 43.0 | 4.52e-01 | 76.4% | 66.0% |
| 2462317 | 4205.1.1.2 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C | 0.72 | 57.0 | 3.75e-01 | 100.0% | 21.7% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 61.0 | 4.66e-01 | 100.0% | 44.8% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.71 | 60.0 | 4.86e-01 | 96.4% | 54.1% |
| 2859872 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.70 | 58.0 | 4.08e-01 | 96.4% | 30.7% |
| 4966182 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.68 | 58.0 | 4.52e-01 | 100.0% | 43.2% |
| 3948700 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.65 | 56.0 | 4.38e-01 | 100.0% | 44.4% |
| 3402912 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 46.0 | 4.38e-01 | 76.4% | 89.2% |
| 3981149 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.64 | 54.0 | 4.93e-01 | 100.0% | 72.2% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.62 | 53.0 | 4.76e-01 | 100.0% | 70.0% |
| 5021347 | 376.1.2.45 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › DUF2180 | 0.59 | 42.0 | 4.02e-01 | 76.4% | 72.3% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.58 | 38.0 | 3.55e-01 | 78.2% | 50.7% |
| 4965229 | 377.1.1.133 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 | 0.57 | 38.0 | 3.89e-01 | 76.4% | 74.0% |
| 4951410 | 376.1.3.96 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF2180 | 0.56 | 40.0 | 3.75e-01 | 78.2% | 68.1% |
| 3684585 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.54 | 45.0 | 3.19e-01 | 100.0% | 79.9% |
| 3265494 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 35.0 | 3.74e-01 | 74.5% | 82.2% |
| 3218708 | 378.1.2.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH | 0.54 | 45.0 | 4.16e-01 | 100.0% | 87.8% |
| 3270201 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.52 | 42.0 | 2.46e-01 | 98.2% | 9.8% |
| 3497893 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.22e-01 | 87.3% | 47.4% |
D3
medium
residues 112-163
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.53e-01 | 92.3% | 88.5% |
| 2kvcA01 | 1.10.150.430 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle | 0.53 | 42.0 | 3.66e-01 | 94.2% | 62.5% |