←Back to structures
SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00076
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00076
Identity
- Kingdom:
- phage
Quality
56.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 393-446
D2
medium
residues 1-110
D3
medium
residues 181-263
D4
medium
residues 264-324
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nslA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.59 | 46.0 | 3.34e-01 | 88.5% | 56.6% |
| 3lhxA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 41.0 | 2.69e-01 | 82.0% | 51.3% |
| 4kcaA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 38.0 | 2.42e-01 | 77.0% | 99.2% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 37.0 | 3.09e-01 | 78.7% | 58.9% |
| 1nr0A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.60e-01 | 86.9% | 80.8% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.21e-01 | 96.7% | 68.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4084373 | 79.1.1.28 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Shufflon_N | 0.88 | 75.0 | 6.78e-01 | 100.0% | 70.0% |
| 1713454 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.54 | 42.0 | 3.52e-01 | 98.4% | 48.1% |
| 3639842 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.54 | 40.0 | 2.42e-01 | 82.0% | 76.5% |
| 4891007 | 5.1.5.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_CFAP43 | 0.54 | 37.0 | 2.36e-01 | 72.1% | 41.8% |
| 2429383 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.52 | 40.0 | 2.64e-01 | 91.8% | 70.4% |
| 4003420 | 3735.1.1.0 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein | 0.51 | 42.0 | 2.28e-01 | 100.0% | 24.6% |
| 3527683 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 37.0 | 2.32e-01 | 82.0% | 95.6% |