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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00087
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00087
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 256-325
Domain cluster:
rep: Filtrate_w_scaffold_6_prodigal-single.1__X__X__00314__D95-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07230.17 best | Portal_T4 | 52.0 | 6.90e-14 | 100.0% | 16.0% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.70 | 50.0 | 4.84e-01 | 95.7% | 66.7% |
| 3bl4A02 | 3.40.970.30 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains | 0.59 | 38.0 | 4.33e-01 | 100.0% | 95.8% |
| 4v1ag00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 41.0 | 3.26e-01 | 100.0% | 35.1% |
| 4u5pA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 50.0 | 4.02e-01 | 98.6% | 77.9% |
| 7kgcA01 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.57 | 40.0 | 3.42e-01 | 100.0% | 43.0% |
| 3c6vA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 50.0 | 3.99e-01 | 100.0% | 79.0% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 44.0 | 3.46e-01 | 87.1% | 82.2% |
| 1josA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 42.0 | 3.72e-01 | 87.1% | 57.0% |
| 3m1gA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 37.0 | 3.17e-01 | 100.0% | 41.5% |
| 2b5eA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.62e-01 | 100.0% | 50.4% |
| 1s3aA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 38.0 | 3.58e-01 | 100.0% | 61.2% |
| 3zq4D03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.74e-01 | 84.3% | 82.1% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 46.0 | 3.43e-01 | 100.0% | 67.6% |
| 2v4iB01 | 3.30.2330.10 | Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily | 0.53 | 44.0 | 4.34e-01 | 94.3% | 90.9% |
| 1wu7A03 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 37.0 | 3.36e-01 | 97.1% | 53.6% |
| 4bmdA01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.52 | 32.0 | 3.00e-01 | 92.9% | 47.2% |
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.52 | 39.0 | 3.47e-01 | 98.6% | 54.2% |
| 3qkiA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 41.0 | 3.30e-01 | 90.0% | 91.4% |
| 4o32C00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.90e-01 | 100.0% | 70.3% |
| 1mjhB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 43.0 | 3.50e-01 | 100.0% | 50.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4059350 | 315.2.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI | 0.70 | 51.0 | 5.04e-01 | 98.6% | 72.0% |
| 3942955 | 315.1.1.5 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 | 0.60 | 53.0 | 4.42e-01 | 100.0% | 92.8% |
| 4518450 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.58 | 45.0 | 3.63e-01 | 87.1% | 82.7% |
| 3924309 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.58 | 40.0 | 3.50e-01 | 100.0% | 47.6% |
| 3223281 | 2004.5.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 | 0.58 | 38.0 | 2.89e-01 | 87.1% | 26.9% |
| 4045130 | 315.1.1.9 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 | 0.57 | 50.0 | 4.16e-01 | 100.0% | 92.0% |
| 4955873 | 2485.1.1.147 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF2703 | 0.56 | 44.0 | 3.85e-01 | 97.1% | 57.1% |
| 3719623 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 48.0 | 3.92e-01 | 100.0% | 60.0% |
| 4559979 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.56 | 48.0 | 4.10e-01 | 98.6% | 93.3% |
| 3248441 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.55 | 40.0 | 3.13e-01 | 78.6% | 93.1% |
| 3496409 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.55 | 41.0 | 2.70e-01 | 82.9% | 88.9% |
| 5004557 | 3228.1.1.0 ↗ | a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III | 0.54 | 41.0 | 3.58e-01 | 82.9% | 97.3% |
| 4028953 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 47.0 | 3.73e-01 | 100.0% | 46.7% |
| 3628884 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.54 | 47.0 | 4.07e-01 | 100.0% | 88.5% |
| 3386660 | 298.3.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › PGDH_inter | 0.54 | 46.0 | 3.88e-01 | 98.6% | 58.4% |
| 3991908 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.53 | 44.0 | 3.72e-01 | 98.6% | 68.5% |
| 4641041 | 2485.1.1.148 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF6856 | 0.53 | 45.0 | 4.17e-01 | 100.0% | 92.6% |
| 3724151 | 3003.1.1.1 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N | 0.52 | 40.0 | 3.12e-01 | 85.7% | 64.7% |
| 3727322 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.52 | 44.0 | 3.25e-01 | 100.0% | 42.9% |
| 4227028 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 39.0 | 2.58e-01 | 82.9% | 18.2% |
| 3687204 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 41.0 | 3.05e-01 | 94.3% | 65.6% |
| 3250933 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 40.0 | 3.60e-01 | 100.0% | 59.0% |
| 4652977 | 2485.1.1.27 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB | 0.51 | 45.0 | 3.83e-01 | 100.0% | 80.9% |
| 3574592 | 2485.1.1.43 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 | 0.50 | 43.0 | 3.24e-01 | 100.0% | 45.3% |
| 3316380 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 40.0 | 3.47e-01 | 95.7% | 63.2% |
D2
medium
residues 106-229_355-414