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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00092
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00092
Identity
- Kingdom:
- phage
Quality
65.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-72
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.63 | 48.0 | 4.47e-01 | 82.4% | 74.4% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.61 | 51.0 | 4.26e-01 | 92.6% | 57.5% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.59 | 41.0 | 3.56e-01 | 72.1% | 72.9% |
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.54 | 46.0 | 3.59e-01 | 97.1% | 82.2% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.54 | 43.0 | 4.20e-01 | 92.6% | 80.0% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.82e-01 | 92.6% | 82.7% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.63e-01 | 92.6% | 91.3% |
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.53 | 45.0 | 3.12e-01 | 100.0% | 57.9% |
| 2d9vA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 43.0 | 3.78e-01 | 92.6% | 89.8% |
| 1egxA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 3.17e-01 | 77.9% | 80.9% |
| 2dtcA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 39.0 | 3.41e-01 | 88.2% | 90.5% |
| 2e11A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 41.0 | 2.84e-01 | 94.1% | 32.5% |
| 4k7zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 37.0 | 2.59e-01 | 79.4% | 35.3% |
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 43.0 | 3.81e-01 | 98.5% | 85.7% |
| 1lamA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.50 | 40.0 | 3.14e-01 | 92.6% | 57.6% |
| 1x05A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 40.0 | 3.35e-01 | 91.2% | 69.0% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 37.0 | 3.03e-01 | 80.9% | 62.8% |
| 3oxhA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 37.0 | 3.18e-01 | 80.9% | 72.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075739 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.74 | 64.0 | 5.26e-01 | 97.1% | 52.8% |
| 3511031 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.65 | 45.0 | 4.73e-01 | 70.6% | 90.0% |
| 3404114 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.57 | 39.0 | 4.26e-01 | 72.1% | 89.1% |
| 3405829 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.57 | 39.0 | 4.24e-01 | 72.1% | 96.4% |
| 3518786 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.56 | 41.0 | 3.66e-01 | 85.3% | 52.4% |
| 3260374 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.54 | 41.0 | 3.71e-01 | 80.9% | 82.8% |
| 3524527 | 220.1.1.33 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 | 0.54 | 44.0 | 3.80e-01 | 91.2% | 78.2% |
| 3942661 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.54 | 43.0 | 3.35e-01 | 88.2% | 85.8% |
| 160842 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 44.0 | 3.63e-01 | 92.6% | 76.2% |
| 3516559 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 43.0 | 3.30e-01 | 89.7% | 40.5% |
| 4157389 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.52 | 39.0 | 3.98e-01 | 80.9% | 95.4% |
| 3906596 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.28e-01 | 95.6% | 91.2% |
| 3265348 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 41.0 | 3.70e-01 | 88.2% | 87.4% |
| 4045124 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 45.0 | 2.99e-01 | 98.5% | 56.0% |
| 3501905 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 41.0 | 3.64e-01 | 88.2% | 83.0% |
| 3874175 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 41.0 | 3.43e-01 | 91.2% | 71.2% |
| 3621943 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 40.0 | 3.35e-01 | 91.2% | 67.7% |
| 3206439 | 220.1.1.30 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH | 0.51 | 44.0 | 3.38e-01 | 98.5% | 49.4% |
| 4025340 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 41.0 | 3.60e-01 | 91.2% | 86.7% |
| 3233071 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 40.0 | 3.51e-01 | 88.2% | 76.2% |
| 3700528 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 40.0 | 3.41e-01 | 92.6% | 79.2% |
D2
medium
residues 107-148