←Back to structures
SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00172
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00172
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-157
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2obbA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.70 | 49.0 | 5.50e-01 | 93.4% | 90.9% |
| 2hcfA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 60.0 | 5.97e-01 | 94.1% | 98.1% |
| 1rqlA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.67 | 59.0 | 5.59e-01 | 93.4% | 98.3% |
| 3k1zA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.67 | 59.0 | 5.92e-01 | 94.1% | 98.7% |
| 2ah5A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.67 | 58.0 | 6.02e-01 | 92.1% | 97.2% |
| 1l8lA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.63 | 57.0 | 5.65e-01 | 98.0% | 92.5% |
| 1qvvA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.60 | 52.0 | 4.53e-01 | 94.1% | 99.1% |
| 2qzjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 42.0 | 4.61e-01 | 94.7% | 95.9% |
| 1y7lA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 32.0 | 3.78e-01 | 79.6% | 79.6% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 46.0 | 3.74e-01 | 87.5% | 98.0% |
| 2q0qA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 49.0 | 4.41e-01 | 94.7% | 97.2% |
| 4d9gA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 32.0 | 3.54e-01 | 76.3% | 68.1% |
| 1e2yF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 44.0 | 4.32e-01 | 94.7% | 77.0% |
| 3lufB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 41.0 | 4.60e-01 | 94.7% | 97.5% |
| 3dciA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 48.0 | 4.40e-01 | 94.7% | 97.6% |
| 4cqmD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 48.0 | 4.11e-01 | 94.1% | 90.3% |
| 2jb9B00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 41.0 | 4.57e-01 | 94.1% | 96.7% |
| 1g8kA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.55 | 46.0 | 3.96e-01 | 90.1% | 81.0% |
| 5ol0B01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.55 | 48.0 | 4.65e-01 | 100.0% | 84.3% |
| 1k68A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 43.0 | 4.53e-01 | 95.4% | 93.6% |
| 2qvgA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 42.0 | 4.50e-01 | 92.1% | 98.4% |
| 1oxkB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 41.0 | 4.44e-01 | 96.1% | 98.4% |
| 3ihtA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 4.07e-01 | 84.2% | 98.2% |
| 2iuyA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 44.0 | 4.25e-01 | 94.1% | 82.4% |
| 3egiA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.93e-01 | 89.5% | 94.4% |
| 4ywhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 44.0 | 4.55e-01 | 100.0% | 97.9% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 45.0 | 3.91e-01 | 98.0% | 89.1% |
| 1dcfA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 39.0 | 4.10e-01 | 93.4% | 91.0% |
| 4oifB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 44.0 | 3.32e-01 | 98.0% | 93.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256854 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.71 | 62.0 | 4.82e-01 | 93.4% | 83.4% |
| 3599599 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.70 | 61.0 | 5.71e-01 | 95.4% | 76.7% |
| 4427505 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.70 | 63.0 | 6.13e-01 | 94.7% | 93.3% |
| 3614050 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.69 | 64.0 | 5.28e-01 | 98.7% | 93.7% |
| 3740291 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.68 | 60.0 | 5.16e-01 | 93.4% | 98.3% |
| 3584528 | 2006.1.1.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_SAK_2 | 0.68 | 60.0 | 5.76e-01 | 94.1% | 90.0% |
| 3476364 | 2006.1.1.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › UMPH-1 | 0.67 | 59.0 | 4.69e-01 | 95.4% | 83.9% |
| 3800678 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.66 | 57.0 | 4.70e-01 | 92.8% | 86.6% |
| 4464625 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.63 | 56.0 | 3.65e-01 | 95.4% | 23.7% |
| 3289068 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.62 | 56.0 | 5.45e-01 | 98.0% | 92.7% |
| 4964424 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 44.0 | 4.67e-01 | 94.7% | 88.1% |
| 4340567 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.58 | 52.0 | 3.92e-01 | 100.0% | 65.7% |
| 3643262 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.56 | 44.0 | 4.37e-01 | 84.2% | 98.2% |
| 3282843 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.56 | 42.0 | 4.39e-01 | 94.7% | 86.7% |
| 5038522 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.56 | 42.0 | 4.60e-01 | 94.1% | 98.3% |
| 3838886 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.56 | 42.0 | 4.51e-01 | 94.7% | 91.5% |
| 4984338 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 42.0 | 4.44e-01 | 94.7% | 91.1% |
| 5057247 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.54 | 34.0 | 3.77e-01 | 92.8% | 78.3% |
| 3663935 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.54 | 41.0 | 4.43e-01 | 95.4% | 95.3% |
| 165361 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.54 | 42.0 | 4.55e-01 | 93.4% | 98.4% |
| 3288648 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 46.0 | 3.60e-01 | 95.4% | 98.8% |
| 3701848 | 7546.1.1.1 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase | 0.52 | 44.0 | 3.95e-01 | 94.1% | 65.2% |
| 3960543 | 7546.1.1.0 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain | 0.52 | 46.0 | 4.22e-01 | 96.1% | 89.0% |
| 2527957 | 2007.1.3.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › OKR_DC_1_N | 0.52 | 44.0 | 4.55e-01 | 94.7% | 95.9% |
| 3287177 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.52 | 46.0 | 3.90e-01 | 98.0% | 96.9% |
| 3471378 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.52 | 45.0 | 3.94e-01 | 95.4% | 87.7% |
| None | — | 0.52 | 41.0 | 3.75e-01 | 84.9% | 79.5% | |
| 3609036 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.51 | 40.0 | 3.49e-01 | 84.2% | 78.8% |