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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00179
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00179
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-133
Domain cluster:
rep: sw_7_scaffold_1_prodigal-single.1__X__X__00357__D2-137
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 35.0 | 5.29e-01 | 77.9% | 100.0% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 34.0 | 4.96e-01 | 77.9% | 100.0% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 36.0 | 4.70e-01 | 81.4% | 83.3% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 39.0 | 4.74e-01 | 84.1% | 80.8% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 36.0 | 4.80e-01 | 83.2% | 93.3% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 41.0 | 5.27e-01 | 81.4% | 98.5% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 35.0 | 4.66e-01 | 78.8% | 91.5% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 39.0 | 4.84e-01 | 79.6% | 91.4% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 39.0 | 4.98e-01 | 82.3% | 100.0% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 43.0 | 4.50e-01 | 88.5% | 72.5% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 40.0 | 4.70e-01 | 84.1% | 86.6% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 40.0 | 4.83e-01 | 83.2% | 93.3% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.65 | 34.0 | 4.36e-01 | 88.5% | 96.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.64 | 38.0 | 4.52e-01 | 83.2% | 87.0% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.61 | 36.0 | 3.71e-01 | 82.3% | 61.5% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 37.0 | 4.44e-01 | 85.0% | 93.2% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 31.0 | 3.45e-01 | 85.0% | 60.9% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 4.56e-01 | 85.0% | 82.5% |
| 3hl8A02 | 3.30.1520.20 | Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 | 0.58 | 46.0 | 4.32e-01 | 84.1% | 84.3% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 4.50e-01 | 99.1% | 98.8% |
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 4.15e-01 | 100.0% | 80.8% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 4.12e-01 | 85.0% | 90.7% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 32.0 | 3.06e-01 | 90.3% | 48.9% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 31.0 | 3.30e-01 | 85.0% | 64.1% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.53 | 48.0 | 4.24e-01 | 100.0% | 68.9% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 31.0 | 3.35e-01 | 83.2% | 71.3% |
| 2nryD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 29.0 | 3.22e-01 | 79.6% | 69.6% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.84 | 41.0 | 5.83e-01 | 80.5% | 98.2% |
| 3989485 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.84 | 38.0 | 5.70e-01 | 77.0% | 100.0% |
| 4139090 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.83 | 41.0 | 5.76e-01 | 80.5% | 98.2% |
| 4953223 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.80 | 37.0 | 5.42e-01 | 79.6% | 100.0% |
| 3707347 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 38.0 | 5.29e-01 | 80.5% | 94.5% |
| 3231177 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.79 | 36.0 | 5.33e-01 | 79.6% | 100.0% |
| 3621818 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.78 | 35.0 | 5.20e-01 | 77.9% | 98.0% |
| 3308604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.78 | 43.0 | 5.29e-01 | 84.1% | 84.0% |
| 4321173 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.77 | 39.0 | 5.37e-01 | 84.1% | 96.6% |
| 4957377 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.77 | 38.0 | 5.05e-01 | 81.4% | 87.3% |
| 4044269 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.75 | 42.0 | 5.30e-01 | 84.1% | 90.0% |
| 3612184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 39.0 | 5.19e-01 | 82.3% | 95.0% |
| 2561577 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.75 | 35.0 | 4.62e-01 | 80.5% | 82.0% |
| 3304627 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.74 | 38.0 | 5.15e-01 | 80.5% | 100.0% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.74 | 36.0 | 4.94e-01 | 79.6% | 94.5% |
| 3592540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 39.0 | 5.12e-01 | 83.2% | 95.0% |
| 3315100 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 38.0 | 4.87e-01 | 84.1% | 86.2% |
| 3359784 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.74 | 38.0 | 4.83e-01 | 84.1% | 86.2% |
| 3936430 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 41.0 | 4.83e-01 | 86.7% | 78.8% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 38.0 | 4.82e-01 | 85.0% | 87.7% |
| 3433070 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 38.0 | 4.69e-01 | 84.1% | 82.6% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.72 | 46.0 | 5.50e-01 | 92.0% | 97.3% |
| 3463181 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 39.0 | 4.84e-01 | 85.8% | 85.7% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.72 | 37.0 | 4.04e-01 | 83.2% | 58.9% |
| 3828348 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 40.0 | 5.14e-01 | 84.1% | 100.0% |
| 3801791 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 36.0 | 4.53e-01 | 84.1% | 87.7% |
| 4999430 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.68 | 48.0 | 4.78e-01 | 100.0% | 69.2% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.68 | 47.0 | 5.23e-01 | 100.0% | 90.0% |
| 3164898 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.68 | 45.0 | 4.85e-01 | 100.0% | 80.0% |
| 4937389 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.67 | 47.0 | 4.83e-01 | 100.0% | 74.5% |
| 3340900 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 38.0 | 4.87e-01 | 84.1% | 98.5% |
| 5037939 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.66 | 49.0 | 4.41e-01 | 100.0% | 56.8% |
| 3910727 | 4.1.1.353 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 | 0.66 | 38.0 | 4.79e-01 | 85.8% | 100.0% |
| 3465976 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 37.0 | 4.77e-01 | 84.1% | 100.0% |
| 3815480 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 37.0 | 4.74e-01 | 84.1% | 100.0% |
| 3313119 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 38.0 | 4.43e-01 | 85.8% | 83.7% |
| 3429682 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 37.0 | 4.43e-01 | 83.2% | 86.7% |
| 3387378 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 42.0 | 4.78e-01 | 83.2% | 89.4% |
| 3709896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 5.20e-01 | 90.3% | 100.0% |
| 3577505 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 43.0 | 4.88e-01 | 100.0% | 94.1% |
| 4954224 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.62 | 46.0 | 4.95e-01 | 88.5% | 90.5% |
| 3832128 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 39.0 | 4.28e-01 | 85.8% | 76.8% |
| 3815479 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 39.0 | 4.71e-01 | 87.6% | 97.3% |
| 3393297 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 41.0 | 4.71e-01 | 100.0% | 95.0% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.61 | 40.0 | 4.73e-01 | 88.5% | 98.7% |
| 3622055 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 42.0 | 4.73e-01 | 99.1% | 94.1% |
| 3503815 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 41.0 | 4.72e-01 | 100.0% | 94.1% |
| 3830763 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.60 | 39.0 | 4.53e-01 | 85.8% | 93.8% |
| 3467678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 38.0 | 3.92e-01 | 85.8% | 67.3% |
| 4668791 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.59 | 32.0 | 3.31e-01 | 85.0% | 55.2% |
| 3389311 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 41.0 | 4.36e-01 | 100.0% | 82.0% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 38.0 | 4.47e-01 | 85.0% | 95.0% |
| 3514906 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 41.0 | 3.40e-01 | 100.0% | 42.6% |
| 3237262 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 42.0 | 4.26e-01 | 100.0% | 76.4% |
| 3514970 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 43.0 | 4.74e-01 | 100.0% | 95.6% |
| 4055256 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 40.0 | 4.41e-01 | 100.0% | 90.0% |
| 3911241 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.57 | 41.0 | 4.38e-01 | 100.0% | 85.0% |
| 3662072 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 39.0 | 3.85e-01 | 85.8% | 66.7% |
| 3663761 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 44.0 | 4.55e-01 | 97.3% | 87.6% |
| 3356591 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 40.0 | 4.35e-01 | 93.8% | 87.4% |
| 3877478 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 40.0 | 4.23e-01 | 100.0% | 82.0% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.56 | 31.0 | 3.60e-01 | 83.2% | 75.0% |
| 3393360 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.56 | 41.0 | 4.11e-01 | 100.0% | 74.8% |
| 4952455 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.56 | 32.0 | 3.56e-01 | 85.8% | 70.8% |
| 3558926 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.55 | 40.0 | 4.47e-01 | 100.0% | 94.4% |
| 4030664 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.55 | 44.0 | 3.89e-01 | 88.5% | 96.6% |
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.55 | 51.0 | 4.78e-01 | 100.0% | 86.7% |
| 3672445 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 3.84e-01 | 83.2% | 92.4% |
| 3561707 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.53 | 40.0 | 4.29e-01 | 100.0% | 92.0% |
| 3452043 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 47.0 | 4.44e-01 | 100.0% | 95.6% |
| 4125814 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.51 | 32.0 | 3.81e-01 | 88.5% | 96.0% |
| 3969508 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 46.0 | 4.02e-01 | 100.0% | 86.5% |
| 3659149 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 3.99e-01 | 86.7% | 86.7% |