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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00203
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00203
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-73
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00144__D16-64
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pw9A01 | 4.10.80.30 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 6 | 0.67 | 34.0 | 3.73e-01 | 90.0% | 100.0% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.66 | 44.0 | 4.91e-01 | 100.0% | 91.3% |
| 3ksrA01 | 6.20.370.100 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.62 | 30.0 | 3.64e-01 | 90.0% | 96.0% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 50.0 | 4.38e-01 | 100.0% | 92.2% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 48.0 | 4.08e-01 | 100.0% | 92.9% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 43.0 | 3.31e-01 | 80.0% | 51.1% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 47.0 | 4.11e-01 | 100.0% | 84.6% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 48.0 | 4.11e-01 | 100.0% | 97.1% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.57 | 35.0 | 3.57e-01 | 88.3% | 63.2% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 50.0 | 4.60e-01 | 96.7% | 98.7% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 30.0 | 3.50e-01 | 91.7% | 74.4% |
| 4me3A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 47.0 | 4.16e-01 | 100.0% | 85.6% |
| 1k1yB02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 36.0 | 2.40e-01 | 100.0% | 15.1% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.56 | 48.0 | 4.29e-01 | 100.0% | 95.5% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 47.0 | 4.04e-01 | 100.0% | 86.5% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.56 | 36.0 | 3.98e-01 | 100.0% | 97.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.85e-01 | 100.0% | 87.3% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 46.0 | 3.92e-01 | 100.0% | 89.3% |
| 3h6qA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 30.0 | 2.25e-01 | 96.7% | 17.9% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 44.0 | 3.85e-01 | 100.0% | 91.9% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 2.61e-01 | 71.7% | 44.7% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.51 | 35.0 | 2.67e-01 | 90.0% | 31.2% |
| 1l0wA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 42.0 | 3.61e-01 | 100.0% | 78.3% |
| 7tm7B01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 39.0 | 2.39e-01 | 88.3% | 32.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4457048 | 5.1.4.413 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML, Beta-prop_EML_2 | 0.75 | 49.0 | 2.79e-01 | 100.0% | 6.1% |
| 4133928 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.68 | 38.0 | 3.01e-01 | 75.0% | 27.5% |
| 4965857 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.65 | 52.0 | 5.08e-01 | 100.0% | 81.2% |
| 5043905 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.64 | 44.0 | 2.97e-01 | 100.0% | 19.6% |
| 4943803 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.63 | 56.0 | 3.64e-01 | 100.0% | 48.9% |
| 3266048 | 213.1.1.26 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_4 | 0.63 | 53.0 | 3.88e-01 | 100.0% | 45.4% |
| 3707760 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.63 | 52.0 | 4.27e-01 | 98.3% | 88.3% |
| 3472643 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.61 | 52.0 | 3.21e-01 | 100.0% | 34.9% |
| 3600626 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 51.0 | 4.42e-01 | 100.0% | 95.0% |
| 4478491 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.61 | 51.0 | 4.36e-01 | 100.0% | 95.2% |
| 4032314 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 50.0 | 4.19e-01 | 100.0% | 84.3% |
| 3452171 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.60 | 41.0 | 2.86e-01 | 100.0% | 19.6% |
| 5003898 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 49.0 | 4.13e-01 | 100.0% | 85.2% |
| 4032979 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 49.0 | 4.18e-01 | 100.0% | 88.2% |
| 3679206 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.59 | 41.0 | 2.48e-01 | 100.0% | 10.2% |
| 3217156 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.57 | 45.0 | 3.61e-01 | 93.3% | 89.3% |
| 4985264 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.56 | 38.0 | 2.99e-01 | 71.7% | 33.3% |
| 3473720 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 47.0 | 3.96e-01 | 100.0% | 88.2% |
| 5036533 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.56 | 38.0 | 2.64e-01 | 100.0% | 19.6% |
| 4238279 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.53 | 45.0 | 3.74e-01 | 100.0% | 87.8% |
| 4506892 | 223.1.1.44 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Per3-like_PAS-A | 0.53 | 42.0 | 3.41e-01 | 98.3% | 45.0% |
| 3309384 | 9.13.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent | 0.53 | 39.0 | 3.28e-01 | 100.0% | 42.9% |
| 4322517 | 7512.1.1.2 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Phosphorylase | 0.52 | 41.0 | 2.48e-01 | 90.0% | 29.9% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 46.0 | 2.81e-01 | 100.0% | 34.3% |
| 3937258 | 220.1.1.159 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP | 0.52 | 45.0 | 3.15e-01 | 100.0% | 41.0% |
| 215919 | 2484.1.1.19 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1,Tnp_DNA_bind | 0.52 | 42.0 | 2.54e-01 | 100.0% | 12.4% |
| 4327241 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.52 | 43.0 | 3.80e-01 | 100.0% | 94.9% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.52 | 43.0 | 2.85e-01 | 100.0% | 36.3% |
| 3850937 | 4004.1.1.10 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 | 0.51 | 43.0 | 3.11e-01 | 98.3% | 33.9% |
| 3757867 | 211.1.1.26 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › zf-3CxxC | 0.51 | 33.0 | 2.75e-01 | 90.0% | 32.8% |
| 158175 | 372.1.1.1 ↗ | a+b complex topology › RNase A-like › RNase A-like › RNase A-like › RnaseA | 0.50 | 39.0 | 3.16e-01 | 100.0% | 42.6% |