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SR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00266
Bact-VirSR-VP_0-2_scaffold_141_4953755_prodigal-single.1__X__X__00266
Identity
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-51
Domain cluster:
representative
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2859147 | 7091.1.1.1 ↗ | a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 | 0.79 | 53.0 | 3.55e-01 | 71.8% | 19.3% |
| 5084030 | 375.2.1.0 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like | 0.78 | 54.0 | 5.90e-01 | 74.4% | 93.3% |
| 3608323 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 49.0 | 4.20e-01 | 71.8% | 41.5% |
| 4027238 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.73 | 54.0 | 3.96e-01 | 82.1% | 77.3% |
| 5084031 | 375.2.1.5 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › UPF0547 | 0.73 | 53.0 | 5.58e-01 | 79.5% | 94.3% |
| 3269360 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.73 | 48.0 | 5.11e-01 | 74.4% | 90.0% |
| 3950698 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.69 | 58.0 | 3.63e-01 | 97.4% | 70.5% |
| 3718984 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.67 | 54.0 | 4.61e-01 | 92.3% | 78.5% |
| 3865327 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 48.0 | 4.96e-01 | 79.5% | 88.6% |
| 3885765 | 375.2.1.3 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › DZR | 0.60 | 50.0 | 4.55e-01 | 100.0% | 92.7% |
| 5065866 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.57 | 38.0 | 3.60e-01 | 71.8% | 84.0% |
| 3725589 | 11.1.3.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu | 0.56 | 34.0 | 2.19e-01 | 92.3% | 13.9% |
| 3606453 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.55 | 37.0 | 3.43e-01 | 71.8% | 80.0% |