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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00068
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
59.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 206-298
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 65.0 | 6.62e-01 | 100.0% | 96.6% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 67.0 | 6.82e-01 | 98.9% | 98.9% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.41e-01 | 93.5% | 98.8% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 66.0 | 6.71e-01 | 100.0% | 100.0% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.71 | 66.0 | 6.23e-01 | 100.0% | 87.2% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 49.0 | 4.73e-01 | 100.0% | 75.5% |
| 6evgA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.59 | 47.0 | 4.21e-01 | 86.0% | 74.2% |
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 52.0 | 3.48e-01 | 100.0% | 38.7% |
| 1a65A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 49.0 | 4.36e-01 | 93.5% | 77.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 65.0 | 6.68e-01 | 98.9% | 97.7% |
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.75 | 68.0 | 6.77e-01 | 100.0% | 96.8% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.75 | 67.0 | 6.79e-01 | 98.9% | 97.8% |
| 2581338 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.73 | 67.0 | 6.65e-01 | 100.0% | 99.0% |
| 4941086 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.67 | 48.0 | 4.59e-01 | 75.3% | 90.7% |
| 4169637 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 58.0 | 4.28e-01 | 100.0% | 63.5% |
| 4562874 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 58.0 | 4.27e-01 | 100.0% | 60.0% |
| 4512437 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 58.0 | 4.18e-01 | 100.0% | 62.6% |
| 4451235 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 57.0 | 4.17e-01 | 100.0% | 62.3% |
| 4058118 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 57.0 | 4.13e-01 | 100.0% | 61.5% |
| 4098875 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 56.0 | 4.12e-01 | 100.0% | 61.5% |
| 4022438 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 56.0 | 4.00e-01 | 100.0% | 63.8% |
| 4253059 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 56.0 | 4.07e-01 | 100.0% | 60.8% |
| 4965696 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 55.0 | 3.96e-01 | 100.0% | 55.9% |
| 4682600 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 54.0 | 3.95e-01 | 100.0% | 62.1% |
| 4518165 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 55.0 | 3.95e-01 | 100.0% | 58.9% |
| 4286724 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 54.0 | 3.95e-01 | 100.0% | 62.0% |
| 146984 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 55.0 | 4.01e-01 | 100.0% | 60.9% |
| 4028092 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.60 | 34.0 | 4.19e-01 | 82.8% | 94.5% |
| 4092984 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.56 | 48.0 | 3.63e-01 | 100.0% | 73.3% |
| 4498099 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.56 | 48.0 | 3.63e-01 | 100.0% | 75.7% |
| 4394964 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.55 | 47.0 | 3.56e-01 | 100.0% | 75.3% |
| 3548841 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.55 | 50.0 | 3.51e-01 | 100.0% | 47.7% |
| 3595625 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 30.0 | 3.58e-01 | 96.8% | 86.2% |
| 3673333 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.50 | 39.0 | 3.60e-01 | 84.9% | 91.2% |
D2
medium
residues 66-168