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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00075
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 239-328
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.69 | 38.0 | 4.51e-01 | 84.4% | 80.0% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.69 | 51.0 | 5.64e-01 | 84.4% | 100.0% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.62 | 55.0 | 5.45e-01 | 97.8% | 100.0% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.62 | 55.0 | 4.09e-01 | 100.0% | 65.2% |
| 3vkhB07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 44.0 | 3.45e-01 | 83.3% | 35.4% |
| 4dtdA02 | 1.10.3680.20 | Mainly Alpha › Orthogonal Bundle › TerB-like › Actin cross-linking domain | 0.60 | 47.0 | 4.16e-01 | 85.6% | 82.5% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 44.0 | 4.56e-01 | 85.6% | 85.4% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 50.0 | 4.39e-01 | 94.4% | 69.3% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.59 | 37.0 | 3.61e-01 | 97.8% | 55.9% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 4.44e-01 | 77.8% | 96.6% |
| 2z15A00 | 3.90.640.90 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain | 0.59 | 49.0 | 4.57e-01 | 94.4% | 100.0% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.59 | 44.0 | 4.53e-01 | 78.9% | 94.2% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.58 | 40.0 | 3.69e-01 | 72.2% | 68.9% |
| 3no6A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.58 | 48.0 | 3.68e-01 | 95.6% | 75.7% |
| 2k3nA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.57 | 43.0 | 3.58e-01 | 81.1% | 54.4% |
| 1jkwA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 48.0 | 3.86e-01 | 94.4% | 73.3% |
| 2ef1A01 | 1.20.82.10 | Mainly Alpha › Up-down Bundle › ADP Ribosyl Cyclase; Chain A, domain 1 › ADP Ribosyl Cyclase; Chain A, domain 1 | 0.55 | 43.0 | 3.86e-01 | 84.4% | 71.1% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 38.0 | 4.09e-01 | 72.2% | 100.0% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.54 | 42.0 | 4.01e-01 | 83.3% | 98.1% |
| 4mo7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 37.0 | 3.18e-01 | 72.2% | 50.7% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 41.0 | 4.20e-01 | 87.8% | 100.0% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.80e-01 | 70.0% | 90.8% |
| 2ke4A00 | 6.10.140.470 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 35.0 | 3.43e-01 | 94.4% | 65.3% |
| 1owlA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 3.40e-01 | 78.9% | 63.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236891 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.73 | 60.0 | 5.29e-01 | 95.6% | 61.5% |
| 3728531 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.72 | 58.0 | 5.43e-01 | 93.3% | 71.8% |
| 4558420 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 41.0 | 4.48e-01 | 98.9% | 68.0% |
| 3518114 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.68 | 50.0 | 5.51e-01 | 87.8% | 100.0% |
| 3217001 | 109.12.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › MAS20 | 0.66 | 55.0 | 5.69e-01 | 95.6% | 96.5% |
| 3998882 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 5.30e-01 | 91.1% | 90.6% |
| 3812000 | 7023.1.1.3 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 | 0.66 | 45.0 | 4.05e-01 | 70.0% | 80.0% |
| 3763473 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 50.0 | 4.28e-01 | 80.0% | 88.6% |
| 3788953 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 41.0 | 4.17e-01 | 94.4% | 64.4% |
| 4679946 | 3869.1.1.1 ↗ | alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C | 0.64 | 50.0 | 3.73e-01 | 82.2% | 46.7% |
| 4559285 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 52.0 | 5.28e-01 | 88.9% | 90.0% |
| 3622792 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 4.37e-01 | 80.0% | 97.5% |
| 3226591 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.63 | 50.0 | 4.27e-01 | 95.6% | 54.3% |
| 5082960 | 159.1.2.35 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › HAAS | 0.63 | 38.0 | 4.17e-01 | 93.3% | 73.3% |
| 185159 | 3552.1.1.1 ↗ | alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 | 0.62 | 44.0 | 4.46e-01 | 73.3% | 87.6% |
| 3620214 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 51.0 | 5.11e-01 | 100.0% | 92.6% |
| 3409435 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.60 | 45.0 | 4.50e-01 | 81.1% | 81.1% |
| 4008954 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.59 | 38.0 | 3.74e-01 | 92.2% | 60.0% |
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 44.0 | 4.33e-01 | 82.2% | 100.0% |
| 3291410 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.58 | 44.0 | 4.80e-01 | 82.2% | 100.0% |
| 3638401 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.57 | 44.0 | 3.63e-01 | 86.7% | 47.1% |
| 4505181 | 5069.1.3.10 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ATP-synt_I | 0.57 | 47.0 | 4.35e-01 | 94.4% | 93.3% |
| 3602256 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.57 | 37.0 | 4.07e-01 | 71.1% | 80.0% |
| 3466646 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.56 | 38.0 | 4.21e-01 | 72.2% | 85.3% |
| 4826576 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.55 | 37.0 | 3.87e-01 | 70.0% | 97.6% |
| 4983811 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 39.0 | 4.01e-01 | 78.9% | 77.6% |
| 4305197 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.55 | 43.0 | 3.44e-01 | 88.9% | 75.0% |
| 5041148 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 35.0 | 3.80e-01 | 85.6% | 85.7% |
| 3723363 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 41.0 | 4.19e-01 | 85.6% | 88.9% |
| 4022288 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 40.0 | 4.11e-01 | 85.6% | 90.6% |
| 4346064 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.51 | 44.0 | 3.35e-01 | 98.9% | 92.0% |
| 3884035 | 611.2.1.0 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) | 0.51 | 32.0 | 2.97e-01 | 97.8% | 44.8% |
| 4933188 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.51 | 41.0 | 4.10e-01 | 100.0% | 85.3% |
| 5007621 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 32.0 | 3.20e-01 | 97.8% | 60.0% |
| 5028077 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 43.0 | 4.00e-01 | 92.2% | 80.9% |
D2
high
residues 501-670
Domain cluster:
rep: S16_GE16_scaffold_5545_prodigal-single.1__X__X__00104__D23-204
D3
high
residues 696-816
Domain cluster:
rep: LC554890.1__BCG50042.1__X__00024__D127-241
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.73 | 48.0 | 5.70e-01 | 94.2% | 98.8% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 59.0 | 5.85e-01 | 100.0% | 92.8% |
| 3oguA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 59.0 | 5.93e-01 | 99.2% | 99.2% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 56.0 | 5.76e-01 | 92.6% | 100.0% |
| 2bcqA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 59.0 | 5.92e-01 | 100.0% | 97.6% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 56.0 | 5.76e-01 | 94.2% | 99.1% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.64 | 42.0 | 4.33e-01 | 92.6% | 69.8% |
| 2mcqA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.62 | 38.0 | 4.53e-01 | 93.4% | 97.3% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.59 | 49.0 | 3.97e-01 | 90.1% | 94.1% |
| 2id1A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 45.0 | 4.81e-01 | 94.2% | 99.0% |
| 6w1kA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.57 | 50.0 | 3.83e-01 | 98.3% | 90.6% |
| 5o5jC01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 38.0 | 4.24e-01 | 94.2% | 91.1% |
| 4oxiA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.57 | 41.0 | 4.42e-01 | 100.0% | 92.9% |
| 5oj2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.67e-01 | 91.7% | 73.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 27.0 | 3.46e-01 | 81.8% | 87.5% |
| 3f8uD03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 3.46e-01 | 90.1% | 69.8% |
| 2pt7G01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 33.0 | 3.92e-01 | 91.7% | 100.0% |
| 7ahsA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.37e-01 | 91.7% | 75.0% |
| 7oodf01 | 3.10.430.100 | Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain | 0.51 | 32.0 | 3.83e-01 | 90.9% | 100.0% |
| 2yd1A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 30.0 | 3.28e-01 | 90.9% | 69.7% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 43.0 | 3.32e-01 | 95.0% | 59.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3735876 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.73 | 64.0 | 5.02e-01 | 100.0% | 47.5% |
| 3696734 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 61.0 | 4.79e-01 | 100.0% | 46.9% |
| 3624234 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.69 | 63.0 | 5.58e-01 | 100.0% | 75.9% |
| 3610425 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.68 | 61.0 | 4.96e-01 | 100.0% | 60.5% |
| 3855748 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.66 | 60.0 | 5.02e-01 | 100.0% | 59.1% |
| 3591232 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.65 | 59.0 | 5.34e-01 | 100.0% | 95.2% |
| 4999126 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.63 | 43.0 | 3.93e-01 | 90.9% | 53.1% |
| 4999867 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.59 | 45.0 | 3.99e-01 | 93.4% | 56.5% |
| 3832774 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.58 | 51.0 | 4.70e-01 | 100.0% | 94.4% |
| 5078510 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 40.0 | 3.23e-01 | 71.9% | 53.6% |
| 4993093 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.57 | 50.0 | 3.75e-01 | 99.2% | 48.5% |
| 3936184 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.57 | 42.0 | 4.29e-01 | 95.0% | 81.7% |
| 3410270 | 11.1.1.605 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_9th | 0.57 | 30.0 | 3.48e-01 | 92.6% | 72.5% |
| 4143474 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.56 | 44.0 | 4.44e-01 | 95.9% | 83.3% |
| 4982758 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.56 | 33.0 | 4.04e-01 | 88.4% | 100.0% |
| 4319175 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.56 | 30.0 | 3.92e-01 | 70.2% | 96.9% |
| 3965967 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 32.0 | 3.45e-01 | 91.7% | 67.0% |
| 3276222 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.55 | 47.0 | 3.93e-01 | 98.3% | 85.7% |
| 4092189 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.54 | 39.0 | 4.02e-01 | 95.0% | 78.3% |
| 4928276 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 49.0 | 3.95e-01 | 97.5% | 60.0% |
| 1421548 | 327.10.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › Ribosomal_S7e | 0.54 | 38.0 | 4.02e-01 | 93.4% | 81.5% |
| 3406228 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 32.0 | 2.50e-01 | 90.9% | 24.9% |
| 5038183 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.52 | 37.0 | 3.43e-01 | 93.4% | 57.3% |
| 3965592 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 46.0 | 4.07e-01 | 100.0% | 75.6% |
| 5060693 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.44e-01 | 90.1% | 66.7% |
| 3471394 | 217.1.1.0 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain | 0.52 | 37.0 | 3.04e-01 | 92.6% | 39.1% |
| 4057947 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 30.0 | 3.73e-01 | 72.7% | 98.6% |
| 3481143 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.12e-01 | 90.9% | 51.9% |
D4
high
residues 826-937
Domain cluster:
rep: BML_coassembly_scaffold_234_prodigal-single.1__X__X__00197__D135-231
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wmyA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 49.0 | 3.65e-01 | 92.9% | 84.4% |
| 5jozA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 50.0 | 3.68e-01 | 94.6% | 83.9% |
| 3i2nA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 49.0 | 3.52e-01 | 95.5% | 86.7% |
| 3zxjA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 48.0 | 3.57e-01 | 94.6% | 82.7% |
| 5hy7B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 47.0 | 3.24e-01 | 93.8% | 80.3% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 48.0 | 3.42e-01 | 96.4% | 95.7% |
| 4irzA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.55 | 45.0 | 3.09e-01 | 90.2% | 91.9% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 48.0 | 3.55e-01 | 99.1% | 97.1% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 43.0 | 3.38e-01 | 87.5% | 90.8% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.25e-01 | 95.5% | 86.4% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 32.0 | 3.47e-01 | 81.2% | 71.1% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 3.23e-01 | 92.9% | 79.5% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.51 | 42.0 | 2.97e-01 | 90.2% | 92.3% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 40.0 | 3.28e-01 | 84.8% | 55.6% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.51 | 39.0 | 3.42e-01 | 95.5% | 52.5% |
| 1a9xA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 40.0 | 3.36e-01 | 85.7% | 58.6% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.51 | 39.0 | 2.79e-01 | 81.2% | 66.0% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.50 | 32.0 | 3.61e-01 | 81.2% | 89.9% |
| 6e5bN00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 43.0 | 3.65e-01 | 98.2% | 89.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3749496 | 5.1.3.99 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP_3 | 0.63 | 50.0 | 3.38e-01 | 86.6% | 77.5% |
| 3583812 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.62 | 54.0 | 3.70e-01 | 96.4% | 86.5% |
| 3407108 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 51.0 | 3.51e-01 | 92.9% | 93.5% |
| 4026079 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.59 | 51.0 | 3.52e-01 | 92.9% | 92.5% |
| 3598605 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.59 | 50.0 | 3.44e-01 | 92.9% | 91.4% |
| 4022336 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 51.0 | 3.51e-01 | 96.4% | 73.0% |
| 4486741 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 50.0 | 3.49e-01 | 92.9% | 91.1% |
| 3466272 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 51.0 | 3.41e-01 | 98.2% | 87.6% |
| 1318584 | 5.1.4.418 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lactonase | 0.58 | 50.0 | 3.56e-01 | 95.5% | 94.5% |
| 4999507 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.58 | 36.0 | 4.34e-01 | 93.8% | 100.0% |
| 3939547 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 51.0 | 3.70e-01 | 99.1% | 93.9% |
| 3933904 | 5.1.4.333 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 | 0.58 | 51.0 | 3.42e-01 | 98.2% | 88.1% |
| 3440368 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 43.0 | 3.10e-01 | 81.2% | 31.3% |
| 3491874 | 5.1.4.254 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N | 0.57 | 48.0 | 3.43e-01 | 95.5% | 86.1% |
| 3275971 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.56 | 48.0 | 3.45e-01 | 96.4% | 94.4% |
| 3670446 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 43.0 | 3.11e-01 | 82.1% | 36.9% |
| 3178555 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 2.82e-01 | 90.2% | 43.2% |
| 3778085 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 47.0 | 3.22e-01 | 93.8% | 78.6% |
| 3853086 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 46.0 | 3.33e-01 | 92.9% | 76.3% |
| 3181119 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.55 | 48.0 | 3.24e-01 | 95.5% | 83.2% |
| 3603190 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 3.01e-01 | 99.1% | 91.7% |
| 4998670 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 40.0 | 4.36e-01 | 100.0% | 96.7% |
| 3913820 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.54 | 43.0 | 3.04e-01 | 85.7% | 79.7% |
| 3215471 | 5.1.4.382 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 | 0.54 | 47.0 | 3.27e-01 | 99.1% | 77.0% |
| 4526577 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.54 | 47.0 | 3.56e-01 | 95.5% | 90.2% |
| 5079413 | 5.1.3.272 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP | 0.53 | 44.0 | 3.42e-01 | 92.0% | 87.5% |
| 3615785 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 46.0 | 2.81e-01 | 96.4% | 42.3% |
| 4083083 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 44.0 | 3.28e-01 | 92.0% | 85.7% |
| 3783013 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 43.0 | 3.18e-01 | 90.2% | 95.0% |
| 3505083 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 43.0 | 3.07e-01 | 90.2% | 52.7% |
| 3790336 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.52 | 45.0 | 3.57e-01 | 95.5% | 72.8% |
| 4028495 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 43.0 | 3.12e-01 | 91.1% | 90.1% |
| 3252404 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.52 | 30.0 | 3.27e-01 | 89.3% | 67.4% |
| 3992786 | 11.1.1.1176 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 | 0.52 | 40.0 | 2.89e-01 | 80.4% | 49.5% |
| 3217717 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 44.0 | 3.04e-01 | 96.4% | 78.4% |
| 3499810 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 41.0 | 2.67e-01 | 86.6% | 23.1% |
| 3870468 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 42.0 | 2.84e-01 | 90.2% | 63.5% |
| 3877056 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.51 | 44.0 | 3.33e-01 | 96.4% | 79.2% |
| 4274290 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 45.0 | 3.34e-01 | 99.1% | 95.4% |
| 3968296 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 46.0 | 3.31e-01 | 100.0% | 100.0% |
| 3684135 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.51 | 40.0 | 2.92e-01 | 84.8% | 60.9% |
| 3928054 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 36.0 | 2.80e-01 | 75.9% | 44.2% |
| 3263689 | 5.1.4.348 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st | 0.50 | 43.0 | 3.12e-01 | 96.4% | 91.1% |
| 4944319 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 45.0 | 3.18e-01 | 100.0% | 97.7% |
| 3690349 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.50 | 39.0 | 2.52e-01 | 82.1% | 32.0% |
D5
medium
residues 1-60_219-238_329-428
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.55 | 29.0 | 3.54e-01 | 88.9% | 77.8% |
D6
medium
residues 61-218
Domain cluster:
rep: IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_10000001230__D94-207