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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00100
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00100
Identity
- Kingdom:
- phage
Quality
63.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-88
Domain cluster:
rep: S16_GE16_scaffold_5545_prodigal-single.1__X__X__00074__D18-89
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.72 | 45.0 | 4.70e-01 | 88.1% | 68.4% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.69 | 37.0 | 4.37e-01 | 83.3% | 76.8% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 49.0 | 4.57e-01 | 75.0% | 85.6% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 47.0 | 4.43e-01 | 73.8% | 85.4% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 42.0 | 3.97e-01 | 92.9% | 57.6% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 34.0 | 3.95e-01 | 78.6% | 75.4% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 45.0 | 3.78e-01 | 83.3% | 84.3% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.59 | 38.0 | 2.96e-01 | 83.3% | 31.8% |
| 2i8dA01 | 3.90.1150.200 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 41.0 | 4.21e-01 | 78.6% | 95.1% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.54 | 37.0 | 3.56e-01 | 81.0% | 61.9% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 36.0 | 4.11e-01 | 79.8% | 98.3% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 43.0 | 3.48e-01 | 89.3% | 82.8% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 32.0 | 3.89e-01 | 77.4% | 100.0% |
| 5wbyC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.00e-01 | 95.2% | 41.2% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.51 | 36.0 | 3.90e-01 | 89.3% | 95.4% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.88e-01 | 95.2% | 76.8% |
| 3v9fA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.07e-01 | 100.0% | 45.0% |
| 2q07A02 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.50 | 33.0 | 3.66e-01 | 81.0% | 89.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4057882 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.76 | 56.0 | 5.29e-01 | 77.4% | 84.0% |
| 3435779 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.69 | 38.0 | 4.51e-01 | 85.7% | 81.8% |
| 3552883 | 64.1.1.9 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 | 0.63 | 35.0 | 3.73e-01 | 89.3% | 61.3% |
| 3924724 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.60 | 41.0 | 4.26e-01 | 71.4% | 88.7% |
| 3436743 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.59 | 40.0 | 2.69e-01 | 70.2% | 89.7% |
| 4263801 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 44.0 | 2.54e-01 | 81.0% | 36.6% |
| 3912572 | 5.1.5.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep | 0.57 | 47.0 | 2.96e-01 | 91.7% | 27.4% |
| 4980648 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 36.0 | 3.83e-01 | 76.2% | 75.7% |
| 3660003 | 5.1.10.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 | 0.56 | 41.0 | 4.21e-01 | 84.5% | 80.0% |
| 3832822 | 5.1.5.80 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_IFT122_1st | 0.56 | 41.0 | 2.59e-01 | 78.6% | 59.3% |
| 4967397 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 36.0 | 3.95e-01 | 75.0% | 84.6% |
| 185632 | 5.1.4.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop | 0.54 | 50.0 | 3.33e-01 | 100.0% | 40.8% |
| 3970659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 36.0 | 4.00e-01 | 85.7% | 98.3% |
| 3700578 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.53 | 33.0 | 3.74e-01 | 83.3% | 88.3% |
| 3888294 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 46.0 | 3.01e-01 | 92.9% | 33.4% |
| 3763123 | 5.1.4.371 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Frtz | 0.52 | 47.0 | 2.98e-01 | 98.8% | 48.1% |
| 3485926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 47.0 | 2.62e-01 | 98.8% | 11.1% |
| 3851160 | 5.1.5.61 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz | 0.52 | 47.0 | 2.82e-01 | 98.8% | 35.4% |
| 3307230 | 109.46.1.9 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40 | 0.52 | 45.0 | 2.79e-01 | 94.0% | 19.9% |
| 3992334 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.09e-01 | 96.4% | 40.0% |
| 3818428 | 4.1.1.66 ↗ | beta barrels › SH3 › SH3 › SH3 › LBR_tudor | 0.51 | 35.0 | 3.64e-01 | 75.0% | 77.3% |
| 3505046 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.51 | 44.0 | 3.94e-01 | 91.7% | 73.9% |
| 3436651 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.51 | 39.0 | 2.70e-01 | 85.7% | 63.9% |
| 4592810 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 45.0 | 3.10e-01 | 96.4% | 41.1% |
| 3266969 | 5.1.4.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 | 0.51 | 44.0 | 3.01e-01 | 94.0% | 42.7% |
| 5072132 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.51 | 37.0 | 3.78e-01 | 77.4% | 87.5% |
| 3728449 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 45.0 | 2.86e-01 | 96.4% | 37.1% |
| 3631797 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.51 | 45.0 | 3.07e-01 | 98.8% | 45.9% |
| 3207575 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.51 | 45.0 | 3.06e-01 | 98.8% | 45.9% |
| 3254426 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.50 | 44.0 | 3.76e-01 | 97.6% | 60.0% |
| 2861537 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 43.0 | 2.99e-01 | 96.4% | 43.4% |
| 3214309 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 44.0 | 2.87e-01 | 96.4% | 33.2% |
| 4000033 | 220.1.1.119 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th | 0.50 | 40.0 | 3.58e-01 | 85.7% | 66.1% |
| 3586660 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.50 | 43.0 | 2.88e-01 | 92.9% | 37.7% |