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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00118

Bact-Vir

SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00118

Identity

Kingdom:
phage

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-68
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 49.0 3.39e-01 77.8% 64.2%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.32e-01 88.9% 31.5%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 42.0 3.69e-01 93.7% 59.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731023 3567.1.1.23 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DUF2985 0.87 61.0 3.99e-01 73.0% 23.0%
3420489 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.72 51.0 4.94e-01 77.8% 67.1%
4959473 148.1.3.411 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HAAS 0.67 48.0 4.83e-01 79.4% 72.3%
3958128 3892.1.1.0 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II 0.64 52.0 3.78e-01 90.5% 70.6%
3599690 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 55.0 3.09e-01 100.0% 39.2%
3504092 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.61 50.0 3.72e-01 88.9% 87.1%