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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00127
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
59.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 196-310
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.69 | 59.0 | 5.40e-01 | 90.4% | 77.4% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 53.0 | 5.27e-01 | 93.0% | 86.0% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.50 | 38.0 | 3.17e-01 | 80.0% | 79.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1107991 | 4166.1.1.4 ↗ | beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › mtd_2nd | 0.69 | 59.0 | 5.95e-01 | 91.3% | 98.3% |
| 3845491 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.54 | 45.0 | 4.47e-01 | 89.6% | 98.3% |
| 3997587 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 37.0 | 4.13e-01 | 93.0% | 100.0% |
| 3891722 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 37.0 | 4.13e-01 | 92.2% | 100.0% |
D2
high
residues 332-480
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00808__D1309-1457
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yu0A02 | 2.80.20.10 | Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein | 0.63 | 47.0 | 4.78e-01 | 98.0% | 78.1% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038875 | 4166.1.1.0 ↗ | beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like | 0.84 | 56.0 | 6.38e-01 | 100.0% | 87.8% |
D3
medium
residues 14-63
D4
medium
residues 721-1019
Domain cluster:
rep: ON649703__UVF62628.1__X__00031__D39-313
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 77.6 | 2.10e-21 | 84.6% | 99.6% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zx5A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 19.0 | 3.71e-01 | 89.3% | 94.0% |
| 4e2oA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 18.0 | 3.42e-01 | 90.3% | 87.5% |
| 2wfpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 19.0 | 3.37e-01 | 90.3% | 83.7% |
| 2lgnA00 | 2.60.40.2850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 14.0 | 2.99e-01 | 71.6% | 81.8% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 20.0 | 3.73e-01 | 90.3% | 100.0% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 19.0 | 3.16e-01 | 90.0% | 84.3% |
| 3n40P04 | 2.60.40.2400 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C | 0.54 | 14.0 | 3.05e-01 | 96.0% | 94.5% |
| 2vecA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 18.0 | 3.23e-01 | 89.6% | 91.3% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.51 | 19.0 | 3.26e-01 | 90.0% | 100.0% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 22.0 | 3.33e-01 | 91.0% | 91.9% |
| 1xf1A03 | 2.60.40.1710 | Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily | 0.50 | 21.0 | 3.20e-01 | 91.3% | 89.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028545 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.67 | 18.0 | 3.73e-01 | 88.0% | 93.3% |
| 3689525 | 10.12.1.129 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, AraC_binding | 0.63 | 20.0 | 3.88e-01 | 90.0% | 97.8% |
| 3348374 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 20.0 | 3.86e-01 | 90.3% | 97.8% |
| 4528208 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.61 | 17.0 | 3.57e-01 | 88.6% | 96.2% |
| 1030922 | 10.12.1.59 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 | 0.56 | 19.0 | 3.37e-01 | 89.6% | 95.7% |
| 4062534 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.55 | 20.0 | 3.07e-01 | 91.0% | 76.4% |
| 5047474 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 17.0 | 3.01e-01 | 90.6% | 83.2% |
| 1280305 | 10.12.1.59 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 | 0.54 | 18.0 | 3.32e-01 | 89.6% | 95.9% |
| 5039010 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 23.0 | 3.45e-01 | 90.6% | 90.0% |
| 4960904 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 20.0 | 3.48e-01 | 90.0% | 98.2% |
| 3930491 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.53 | 19.0 | 3.09e-01 | 90.6% | 86.4% |
| 3927998 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 20.0 | 3.37e-01 | 90.3% | 96.4% |
| 3503404 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 19.0 | 3.06e-01 | 90.3% | 86.1% |
| 3939754 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 20.0 | 3.24e-01 | 90.6% | 91.3% |
| 3929714 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 20.0 | 3.15e-01 | 90.6% | 85.6% |
| 3924847 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 20.0 | 3.27e-01 | 90.3% | 93.0% |
| 3215715 | 10.12.1.5 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C | 0.52 | 19.0 | 3.07e-01 | 91.3% | 88.2% |
| 3936051 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.51 | 19.0 | 3.18e-01 | 90.0% | 92.7% |
| 4962830 | 10.1.2.197 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF7263 | 0.51 | 18.0 | 3.17e-01 | 88.0% | 97.9% |
| 5013259 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 22.0 | 3.31e-01 | 95.7% | 93.6% |
| 3228983 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.51 | 19.0 | 3.04e-01 | 92.3% | 89.5% |
| 3931916 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.51 | 19.0 | 3.12e-01 | 89.6% | 91.8% |
| 3935020 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 19.0 | 3.17e-01 | 90.6% | 93.6% |
| 1198 | 10.2.1.31 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin | 0.50 | 19.0 | 3.25e-01 | 91.6% | 99.0% |
| 3926224 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 19.0 | 3.10e-01 | 90.0% | 90.4% |
| 3936620 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 19.0 | 3.16e-01 | 90.6% | 94.5% |
| 3924820 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.50 | 19.0 | 3.11e-01 | 90.6% | 91.3% |
D5
medium
residues 1304-1379