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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00130
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00130
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 109-207
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 64.0 | 6.63e-01 | 99.0% | 100.0% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 58.0 | 6.27e-01 | 94.9% | 100.0% |
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 61.0 | 6.40e-01 | 100.0% | 98.9% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 61.0 | 6.30e-01 | 98.0% | 100.0% |
| 3g5wA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.69 | 51.0 | 4.32e-01 | 77.8% | 69.3% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 61.0 | 5.96e-01 | 100.0% | 88.1% |
| 1zpuA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.68 | 50.0 | 3.97e-01 | 76.8% | 72.2% |
| 4knuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 49.0 | 4.20e-01 | 77.8% | 74.2% |
| 3zx1A01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 52.0 | 4.45e-01 | 83.8% | 64.4% |
| 2xu9A03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 48.0 | 4.45e-01 | 76.8% | 75.0% |
| 4f7kA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.63 | 47.0 | 4.19e-01 | 77.8% | 74.6% |
| 1aozA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.63 | 50.0 | 3.89e-01 | 83.8% | 95.6% |
| 1ibyA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.63 | 46.0 | 4.47e-01 | 77.8% | 81.2% |
| 6xizA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.62 | 50.0 | 4.28e-01 | 86.9% | 66.5% |
| 4f54A00 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 49.0 | 3.95e-01 | 83.8% | 71.0% |
| 3sqrA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.61 | 48.0 | 3.87e-01 | 83.8% | 95.3% |
| 3wi9A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.58 | 48.0 | 3.47e-01 | 92.9% | 33.7% |
| 3kd4A03 | 2.60.120.1130 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 45.0 | 4.02e-01 | 82.8% | 91.2% |
| 2nncA00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.55 | 38.0 | 3.72e-01 | 87.9% | 64.5% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 40.0 | 3.54e-01 | 82.8% | 90.1% |
| 7esdB01 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.61e-01 | 92.9% | 76.1% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 42.0 | 3.18e-01 | 96.0% | 86.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.74 | 64.0 | 6.61e-01 | 99.0% | 98.9% |
| 4012674 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.66 | 52.0 | 4.44e-01 | 83.8% | 95.5% |
| 3952691 | 3156.1.1.8 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 | 0.66 | 48.0 | 4.47e-01 | 76.8% | 75.0% |
| 3289663 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 58.0 | 4.53e-01 | 100.0% | 82.7% |
| 3974327 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.63 | 46.0 | 4.03e-01 | 76.8% | 77.3% |
| 3507757 | 11.1.1.385 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASH | 0.63 | 45.0 | 4.16e-01 | 73.7% | 62.4% |
| 4611212 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 55.0 | 4.11e-01 | 100.0% | 62.7% |
| 4237289 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 55.0 | 4.13e-01 | 100.0% | 63.5% |
| 4963944 | 3156.1.1.8 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 | 0.61 | 53.0 | 4.23e-01 | 92.9% | 73.7% |
| 4562874 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.59 | 51.0 | 3.89e-01 | 100.0% | 71.8% |
| 3994622 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.57 | 45.0 | 4.27e-01 | 88.9% | 100.0% |
| 3573761 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.55 | 44.0 | 3.90e-01 | 87.9% | 70.3% |
| 5056110 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 46.0 | 4.19e-01 | 98.0% | 72.6% |
| 3262978 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 42.0 | 3.10e-01 | 100.0% | 35.8% |
D2
medium
residues 1-65