←Back to structures
SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00180
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00180
Identity
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-73
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jwkA00 | 3.30.420.270 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.69 | 63.0 | 5.95e-01 | 100.0% | 95.9% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 61.0 | 4.14e-01 | 100.0% | 67.5% |
| 5i2cB01 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.63 | 55.0 | 4.22e-01 | 100.0% | 100.0% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 42.0 | 3.24e-01 | 100.0% | 30.3% |
| 3nuwA01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.60 | 53.0 | 4.72e-01 | 100.0% | 90.0% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 39.0 | 3.70e-01 | 100.0% | 54.5% |
| 2a6aB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 46.0 | 3.92e-01 | 98.4% | 95.0% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 40.0 | 3.29e-01 | 77.4% | 54.1% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 42.0 | 3.51e-01 | 87.1% | 85.3% |
| 2q7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.63e-01 | 79.0% | 100.0% |
| 4hlbA00 | 3.30.70.2960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.75e-01 | 90.3% | 85.3% |
| 4epcA01 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.13e-01 | 100.0% | 51.9% |
| 4kx7A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.34e-01 | 77.4% | 100.0% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.38e-01 | 100.0% | 92.5% |
| 4ifdF00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.50 | 38.0 | 2.76e-01 | 88.7% | 73.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3698391 | 242.3.1.1 ↗ | a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I | 0.73 | 66.0 | 5.20e-01 | 100.0% | 66.4% |
| 3968441 | 2484.1.1.30 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Carbam_trans_N | 0.68 | 55.0 | 4.27e-01 | 91.9% | 93.1% |
| 3169931 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 59.0 | 4.42e-01 | 100.0% | 81.9% |
| 3274216 | 220.1.1.49 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH | 0.65 | 47.0 | 3.74e-01 | 79.0% | 45.2% |
| 4049940 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.62 | 53.0 | 4.16e-01 | 95.2% | 90.8% |
| 4943735 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.61 | 45.0 | 2.60e-01 | 80.6% | 7.9% |
| 3170319 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.60 | 48.0 | 4.87e-01 | 87.1% | 98.3% |
| 1414921 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.59 | 47.0 | 3.54e-01 | 90.3% | 40.6% |
| 5035569 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 43.0 | 2.82e-01 | 80.6% | 16.7% |
| 5040710 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.59 | 51.0 | 3.53e-01 | 100.0% | 94.0% |
| 4025340 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.39e-01 | 77.4% | 65.7% |
| 3373407 | 1013.1.1.0 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain | 0.55 | 44.0 | 3.23e-01 | 95.2% | 29.7% |
| 4568828 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.55 | 49.0 | 4.18e-01 | 100.0% | 76.0% |
| 3239118 | 1013.1.1.0 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain | 0.55 | 42.0 | 3.16e-01 | 95.2% | 30.0% |
| 3400905 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.54 | 45.0 | 3.24e-01 | 100.0% | 87.4% |
| 3889957 | 1013.1.1.0 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain | 0.53 | 41.0 | 2.97e-01 | 95.2% | 25.2% |
| 3919542 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.53 | 40.0 | 3.49e-01 | 82.3% | 67.0% |
| 3726720 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.53 | 42.0 | 2.99e-01 | 95.2% | 25.2% |
| 4299504 | 1013.1.1.1 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 | 0.52 | 42.0 | 3.08e-01 | 95.2% | 29.5% |
| 3896415 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.52 | 40.0 | 3.49e-01 | 82.3% | 70.5% |
| 4188763 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 3.81e-01 | 100.0% | 74.3% |
| 4452931 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.51 | 45.0 | 3.78e-01 | 100.0% | 72.4% |
| 4554927 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.50 | 44.0 | 3.78e-01 | 100.0% | 75.0% |
| 3497495 | 1013.1.1.0 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain | 0.50 | 40.0 | 2.88e-01 | 93.5% | 27.0% |