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SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00204
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00204
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-114_171-201_259-276
Domain cluster:
rep: IMGVR_UViG_3300033144_009684-3300033144-Ga0366838_10361285__D6-140
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xhbA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.74 | 63.0 | 5.39e-01 | 89.0% | 85.3% |
| 1wkbA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.69 | 53.0 | 3.81e-01 | 79.1% | 81.5% |
| 1ll0B00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.69 | 58.0 | 4.86e-01 | 89.0% | 62.9% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.68 | 60.0 | 4.70e-01 | 92.0% | 89.9% |
| 2z86D01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.68 | 58.0 | 4.48e-01 | 89.0% | 68.6% |
| 3sp1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.68 | 52.0 | 4.38e-01 | 79.1% | 76.4% |
| 4kt7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.68 | 58.0 | 5.09e-01 | 89.0% | 79.7% |
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.68 | 52.0 | 3.83e-01 | 80.4% | 77.5% |
| 1obhA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 51.0 | 4.14e-01 | 79.1% | 94.4% |
| 1li5B01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 51.0 | 4.39e-01 | 79.1% | 79.7% |
| 3bcvA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.67 | 57.0 | 5.36e-01 | 89.0% | 91.3% |
| 3cgxA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.67 | 56.0 | 4.98e-01 | 88.3% | 73.9% |
| 3c8zA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 51.0 | 4.10e-01 | 79.1% | 75.3% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 51.0 | 3.95e-01 | 79.1% | 73.3% |
| 2csxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 49.0 | 4.43e-01 | 79.1% | 74.4% |
| 1irxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 49.0 | 4.35e-01 | 79.1% | 88.8% |
| 2e8bA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.64 | 54.0 | 5.16e-01 | 89.0% | 84.3% |
| 1a9xA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 41.0 | 4.76e-01 | 77.3% | 90.5% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 48.0 | 3.89e-01 | 78.5% | 77.6% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.63 | 45.0 | 4.99e-01 | 74.8% | 92.3% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 44.0 | 4.46e-01 | 72.4% | 85.6% |
| 2b7jB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 46.0 | 4.59e-01 | 76.7% | 89.8% |
| 3tovA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 42.0 | 4.29e-01 | 88.3% | 71.2% |
| 8g0cG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.60 | 50.0 | 4.59e-01 | 87.7% | 75.4% |
| 8dbsG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.60 | 50.0 | 4.53e-01 | 87.7% | 74.3% |
| 1nm3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 42.0 | 4.33e-01 | 71.8% | 81.8% |
| 2hhcA02 | 3.40.50.11350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 40.0 | 4.22e-01 | 73.0% | 76.1% |
| 3lwaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 42.0 | 4.30e-01 | 72.4% | 75.3% |
| 5fl7G02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.59 | 49.0 | 4.54e-01 | 87.7% | 76.2% |
| 3nb0B02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 46.0 | 4.05e-01 | 82.8% | 84.0% |
| 2yk4A01 | 3.30.370.20 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › | 0.59 | 31.0 | 4.20e-01 | 85.3% | 100.0% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 39.0 | 4.05e-01 | 71.8% | 71.7% |
| 6jtdA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 48.0 | 4.09e-01 | 88.3% | 72.6% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 49.0 | 3.99e-01 | 89.0% | 88.0% |
| 4bpyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 42.0 | 4.20e-01 | 73.6% | 79.8% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 49.0 | 4.22e-01 | 90.2% | 80.8% |
| 2iueA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.57 | 48.0 | 4.40e-01 | 100.0% | 67.9% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.57 | 47.0 | 4.04e-01 | 87.7% | 84.2% |
| 1gzuA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 48.0 | 4.25e-01 | 89.0% | 100.0% |
| 3s6dA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 40.0 | 3.40e-01 | 72.4% | 96.3% |
| 4iilA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 36.0 | 3.87e-01 | 88.3% | 75.2% |
| 3ewlB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 38.0 | 4.05e-01 | 71.2% | 80.3% |
| 3bblA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 34.0 | 3.70e-01 | 89.0% | 71.0% |
| 1efpB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 50.0 | 4.37e-01 | 98.8% | 85.0% |
| 2iqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 41.0 | 3.36e-01 | 98.8% | 42.7% |
| 3gbvA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 34.0 | 3.69e-01 | 89.0% | 72.1% |
| 1o97C00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 50.0 | 4.33e-01 | 98.8% | 80.1% |
| 5lqdA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 43.0 | 3.97e-01 | 83.4% | 87.9% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 50.0 | 4.20e-01 | 98.8% | 77.9% |
| 1gz1A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.54 | 45.0 | 3.53e-01 | 90.8% | 63.8% |
| 2b4yA01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.54 | 39.0 | 4.06e-01 | 88.3% | 79.6% |
| 5hvmA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 42.0 | 3.92e-01 | 83.4% | 88.0% |
| 3wrwA01 | 3.40.50.12020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NN domain | 0.54 | 44.0 | 4.28e-01 | 87.7% | 77.8% |
| 3rd5A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.79e-01 | 89.6% | 94.0% |
| 2p14A00 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 38.0 | 3.67e-01 | 99.4% | 65.1% |
| 3oy2A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 42.0 | 3.75e-01 | 84.0% | 84.9% |
| 2b34A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.52 | 43.0 | 4.06e-01 | 89.0% | 72.9% |
| 3qi7A01 | 3.40.50.11400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 3.90e-01 | 89.0% | 80.7% |
| 1d4oA00 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.52 | 41.0 | 4.03e-01 | 88.3% | 76.8% |
| 1d5wA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 33.0 | 3.75e-01 | 100.0% | 84.6% |
| 4wqmA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 38.0 | 4.21e-01 | 87.1% | 95.5% |
| 5dxfA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 41.0 | 3.82e-01 | 85.3% | 87.0% |
| 5v8sA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 35.0 | 3.64e-01 | 89.0% | 75.2% |
| 3t5tA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 42.0 | 4.04e-01 | 89.0% | 94.1% |
ECOD (95)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483730 | 7516.1.1.3 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2,Glyco_transf_7C | 0.75 | 64.0 | 4.67e-01 | 89.0% | 68.7% |
| 3417283 | 7516.1.1.16 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 | 0.72 | 55.0 | 4.50e-01 | 79.1% | 85.2% |
| 3867818 | 7516.1.1.130 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › PF30737 | 0.72 | 61.0 | 4.52e-01 | 89.0% | 68.8% |
| 5028544 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.71 | 60.0 | 5.09e-01 | 89.0% | 89.8% |
| 4998316 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.70 | 60.0 | 5.23e-01 | 88.3% | 97.4% |
| 3578229 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.70 | 60.0 | 4.74e-01 | 89.0% | 81.6% |
| 3988594 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.69 | 54.0 | 5.48e-01 | 80.4% | 98.8% |
| 4997454 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.69 | 59.0 | 5.33e-01 | 89.0% | 82.8% |
| 3366495 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.69 | 58.0 | 4.56e-01 | 89.0% | 77.6% |
| 2873240 | 2005.1.1.55 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g | 0.69 | 52.0 | 4.01e-01 | 78.5% | 81.7% |
| None | — | 0.69 | 52.0 | 4.21e-01 | 78.5% | 95.7% | |
| 4551548 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.69 | 52.0 | 3.59e-01 | 78.5% | 53.2% |
| 3188032 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.68 | 52.0 | 3.98e-01 | 79.1% | 87.1% |
| 5039246 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.45e-01 | 78.5% | 90.6% |
| 3580109 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.68 | 58.0 | 5.64e-01 | 89.0% | 93.7% |
| 4025154 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.68 | 52.0 | 4.23e-01 | 79.1% | 92.7% |
| None | — | 0.68 | 52.0 | 4.37e-01 | 79.1% | 83.7% | |
| 3601639 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.68 | 52.0 | 4.34e-01 | 79.1% | 92.4% |
| 4381180 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.15e-01 | 79.1% | 83.2% |
| None | — | 0.68 | 52.0 | 3.98e-01 | 79.1% | 70.0% | |
| 4150792 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.36e-01 | 79.1% | 80.4% |
| 4947484 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.44e-01 | 79.1% | 92.2% |
| 4885816 | 375.1.1.10 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1e | 0.68 | 52.0 | 4.44e-01 | 79.1% | 90.6% |
| 3311247 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.68 | 52.0 | 4.05e-01 | 78.5% | 84.5% |
| 3604946 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.68 | 52.0 | 4.16e-01 | 79.1% | 97.1% |
| 4472771 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.43e-01 | 79.1% | 91.8% |
| None | — | 0.68 | 52.0 | 4.18e-01 | 79.1% | 77.0% | |
| None | — | 0.68 | 52.0 | 4.12e-01 | 79.1% | 71.9% | |
| None | — | 0.68 | 52.0 | 4.11e-01 | 79.1% | 73.8% | |
| None | — | 0.68 | 52.0 | 4.10e-01 | 79.1% | 75.4% | |
| None | — | 0.68 | 52.0 | 4.16e-01 | 79.1% | 75.8% | |
| 4926863 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.68 | 52.0 | 4.14e-01 | 78.5% | 73.9% |
| 4361852 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.68 | 51.0 | 3.59e-01 | 78.5% | 50.9% |
| None | — | 0.68 | 52.0 | 3.97e-01 | 79.1% | 64.4% | |
| 3172677 | 2005.1.1.40 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g | 0.68 | 51.0 | 3.48e-01 | 78.5% | 55.0% |
| None | — | 0.67 | 51.0 | 4.03e-01 | 79.1% | 70.4% | |
| 4269941 | 2005.1.1.55 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g | 0.67 | 52.0 | 4.10e-01 | 79.1% | 72.2% |
| 4030453 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.67 | 52.0 | 3.41e-01 | 80.4% | 51.0% |
| 5021034 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.67 | 51.0 | 4.14e-01 | 77.9% | 83.4% |
| 4202058 | 2005.1.1.40 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g | 0.67 | 51.0 | 4.34e-01 | 77.9% | 95.7% |
| 5001837 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.67 | 51.0 | 4.31e-01 | 79.1% | 87.4% |
| None | — | 0.67 | 51.0 | 4.20e-01 | 78.5% | 86.7% | |
| None | — | 0.67 | 51.0 | 3.57e-01 | 79.1% | 51.3% | |
| None | — | 0.67 | 51.0 | 3.43e-01 | 78.5% | 41.9% | |
| 5073144 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.67 | 51.0 | 4.28e-01 | 79.1% | 87.3% |
| None | — | 0.67 | 51.0 | 3.58e-01 | 78.5% | 50.7% | |
| 4973688 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.67 | 51.0 | 4.37e-01 | 79.1% | 92.5% |
| 5004224 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.67 | 51.0 | 3.58e-01 | 79.1% | 48.9% |
| 3966537 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.67 | 50.0 | 3.53e-01 | 77.9% | 50.5% |
| None | — | 0.66 | 51.0 | 4.42e-01 | 79.1% | 93.1% | |
| 4997388 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.66 | 62.0 | 4.69e-01 | 100.0% | 57.0% |
| None | — | 0.66 | 50.0 | 3.34e-01 | 77.9% | 40.6% | |
| None | — | 0.66 | 51.0 | 4.07e-01 | 79.1% | 87.4% | |
| 4986992 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.65 | 50.0 | 3.49e-01 | 79.1% | 49.4% |
| 4032897 | 7516.1.1.106 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, PF30648 | 0.65 | 59.0 | 4.73e-01 | 96.9% | 100.0% |
| 3470238 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.65 | 55.0 | 4.51e-01 | 89.0% | 58.2% |
| 4573193 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.65 | 49.0 | 3.88e-01 | 79.1% | 70.7% |
| 4932368 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.65 | 49.0 | 4.18e-01 | 79.1% | 92.5% |
| 4944615 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.65 | 49.0 | 4.08e-01 | 79.1% | 87.4% |
| 3603442 | 101.8.1.1 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 | 0.64 | 49.0 | 3.42e-01 | 79.1% | 45.7% |
| 5014374 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.64 | 49.0 | 3.41e-01 | 79.1% | 46.7% |
| 4203984 | 101.8.1.1 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 | 0.64 | 49.0 | 3.41e-01 | 79.1% | 46.7% |
| 5055781 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.64 | 49.0 | 3.92e-01 | 78.5% | 79.7% |
| 5080195 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 48.0 | 3.49e-01 | 78.5% | 42.7% |
| 5069731 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.63 | 48.0 | 3.48e-01 | 79.1% | 41.8% |
| 5079099 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.63 | 48.0 | 3.32e-01 | 79.1% | 48.8% |
| 4947837 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.63 | 48.0 | 4.03e-01 | 79.1% | 91.1% |
| 5066634 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.61 | 47.0 | 3.43e-01 | 78.5% | 38.8% |
| 4246110 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.61 | 51.0 | 4.08e-01 | 87.7% | 56.1% |
| 4301522 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.60 | 50.0 | 4.27e-01 | 87.7% | 55.8% |
| 3838772 | 7512.1.1.46 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_11 | 0.59 | 43.0 | 4.59e-01 | 86.5% | 85.7% |
| 4510818 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.59 | 49.0 | 4.04e-01 | 87.7% | 57.9% |
| 4323951 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.59 | 49.0 | 4.18e-01 | 87.7% | 63.1% |
| 3474272 | 7512.1.1.27 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › O-FucT | 0.59 | 43.0 | 3.98e-01 | 75.5% | 70.5% |
| 4461284 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.58 | 52.0 | 3.98e-01 | 96.3% | 94.3% |
| 4985936 | 7512.1.1.18 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn | 0.58 | 46.0 | 3.85e-01 | 83.4% | 82.1% |
| 4804156 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.58 | 38.0 | 4.23e-01 | 81.6% | 82.9% |
| 3595396 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.58 | 49.0 | 4.17e-01 | 88.3% | 82.4% |
| 3706502 | 7512.1.1.53 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › ALG11_N | 0.57 | 48.0 | 4.08e-01 | 88.3% | 79.2% |
| 3836058 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.57 | 43.0 | 4.56e-01 | 78.5% | 92.4% |
| 3229775 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.56 | 43.0 | 4.16e-01 | 81.6% | 92.1% |
| 4362258 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.55 | 44.0 | 3.99e-01 | 84.7% | 80.0% |
| 4158490 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.55 | 43.0 | 3.84e-01 | 84.7% | 78.3% |
| 5024746 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.55 | 43.0 | 3.99e-01 | 84.7% | 87.0% |
| 4971928 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 45.0 | 3.71e-01 | 85.9% | 81.8% |
| 3651717 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.54 | 43.0 | 3.67e-01 | 85.3% | 73.5% |
| 4954066 | 7512.1.1.32 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 | 0.53 | 42.0 | 4.04e-01 | 84.7% | 88.7% |
| 3173420 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.53 | 43.0 | 3.78e-01 | 84.7% | 81.7% |
| 4011315 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 43.0 | 3.79e-01 | 85.3% | 80.8% |
| 3496226 | 2003.1.4.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain | 0.53 | 41.0 | 4.03e-01 | 88.3% | 73.9% |
| 2489192 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.53 | 37.0 | 4.20e-01 | 82.2% | 93.7% |
| 4945636 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.53 | 44.0 | 4.12e-01 | 89.0% | 80.5% |
| 4027796 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.50 | 42.0 | 3.91e-01 | 89.0% | 76.6% |
| 3763738 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.50 | 46.0 | 4.59e-01 | 100.0% | 100.0% |
| 3855879 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.50 | 46.0 | 4.54e-01 | 100.0% | 100.0% |
D2
medium
residues 115-170_202-258
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 37.0 | 2.79e-01 | 76.1% | 37.1% |
| 5eowA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.62e-01 | 76.1% | 65.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978755 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.71 | 61.0 | 4.70e-01 | 92.9% | 51.2% |
| 4998015 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 51.0 | 4.05e-01 | 93.8% | 59.1% |
| 5049176 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.53 | 31.0 | 3.29e-01 | 73.5% | 65.0% |
| 4984662 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.51 | 35.0 | 2.96e-01 | 75.2% | 40.7% |
| 5062198 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.51 | 37.0 | 3.00e-01 | 75.2% | 40.5% |
| 3961922 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.51 | 37.0 | 2.81e-01 | 77.0% | 74.1% |