←Back to structures
SR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00243
Bact-VirSR-VP_0-2_scaffold_141_5191495_prodigal-single.1__X__X__00243
Identity
- Kingdom:
- phage
Quality
78.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-118
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 41.0 | 4.92e-01 | 78.8% | 92.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.65 | 47.0 | 4.52e-01 | 76.1% | 84.7% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.63 | 44.0 | 4.50e-01 | 72.6% | 72.6% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.63 | 48.0 | 4.57e-01 | 81.4% | 85.2% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.62 | 40.0 | 4.03e-01 | 87.6% | 62.9% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.61 | 51.0 | 3.76e-01 | 91.2% | 94.2% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.61 | 43.0 | 3.70e-01 | 73.5% | 54.0% |
| 6nobA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 48.0 | 3.33e-01 | 87.6% | 80.9% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.58 | 36.0 | 3.25e-01 | 90.3% | 45.0% |
| 1lurA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 42.0 | 3.00e-01 | 76.1% | 88.3% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 42.0 | 3.00e-01 | 79.6% | 99.1% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 4.07e-01 | 90.3% | 75.8% |
| 2hqsA01 | 3.40.50.10070 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain | 0.54 | 41.0 | 3.85e-01 | 85.8% | 64.1% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.69e-01 | 76.1% | 75.2% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 4.30e-01 | 81.4% | 100.0% |
| 3pijA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 3.22e-01 | 96.5% | 71.4% |
| 2zxkA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.53 | 46.0 | 3.48e-01 | 94.7% | 84.6% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.84e-01 | 92.9% | 70.6% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.63e-01 | 72.6% | 92.7% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 42.0 | 3.50e-01 | 86.7% | 51.5% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.99e-01 | 90.3% | 78.5% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.90e-01 | 90.3% | 77.6% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 46.0 | 4.00e-01 | 100.0% | 66.9% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 3.04e-01 | 77.9% | 66.1% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.52 | 46.0 | 3.77e-01 | 97.3% | 73.5% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.91e-01 | 93.8% | 89.0% |
| 7fjlA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 46.0 | 3.58e-01 | 99.1% | 68.7% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 37.0 | 3.55e-01 | 77.0% | 83.8% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.51 | 42.0 | 3.49e-01 | 93.8% | 100.0% |
| 3fcxB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 3.12e-01 | 89.4% | 48.0% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3819740 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.70 | 54.0 | 5.91e-01 | 91.2% | 100.0% |
| 3802306 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.70 | 56.0 | 6.01e-01 | 91.2% | 100.0% |
| 3228525 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.68 | 53.0 | 5.38e-01 | 80.5% | 89.1% |
| 5044451 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 37.0 | 4.33e-01 | 92.9% | 75.0% |
| 146266 | 295.1.1.8 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 | 0.64 | 41.0 | 4.65e-01 | 77.0% | 85.7% |
| 3703242 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.64 | 41.0 | 4.08e-01 | 90.3% | 61.7% |
| 3644755 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.63 | 46.0 | 3.32e-01 | 76.1% | 42.9% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.63 | 51.0 | 5.34e-01 | 92.0% | 98.0% |
| 3176080 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.41e-01 | 93.8% | 59.5% |
| 346609 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.60 | 51.0 | 4.16e-01 | 92.9% | 87.8% |
| 3512069 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.60 | 44.0 | 3.63e-01 | 76.1% | 60.0% |
| 3425526 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.60 | 54.0 | 4.59e-01 | 100.0% | 71.0% |
| 4466226 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.60 | 44.0 | 4.56e-01 | 76.1% | 90.5% |
| 3322026 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.60 | 47.0 | 4.26e-01 | 85.0% | 68.4% |
| 3185222 | 868.1.1.4 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › VTC | 0.59 | 50.0 | 3.67e-01 | 91.2% | 58.0% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.59 | 50.0 | 5.15e-01 | 92.0% | 99.0% |
| 3600408 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.59 | 43.0 | 3.25e-01 | 75.2% | 50.0% |
| 3439646 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.59 | 44.0 | 4.57e-01 | 87.6% | 84.8% |
| 3743943 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.58 | 48.0 | 3.26e-01 | 90.3% | 84.0% |
| 3928894 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.58 | 44.0 | 3.61e-01 | 79.6% | 50.2% |
| 4528584 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.58 | 43.0 | 3.75e-01 | 77.9% | 95.3% |
| 4195303 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.58 | 43.0 | 3.65e-01 | 77.9% | 53.0% |
| 3633770 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 48.0 | 3.20e-01 | 91.2% | 71.4% |
| 3491456 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.57 | 50.0 | 4.58e-01 | 97.3% | 74.0% |
| 3661138 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.56 | 44.0 | 4.13e-01 | 83.2% | 94.3% |
| 3250629 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.56 | 40.0 | 4.17e-01 | 75.2% | 81.0% |
| 2324030 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.55 | 46.0 | 4.54e-01 | 93.8% | 83.3% |
| 3204864 | 5.1.11.3 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller | 0.54 | 49.0 | 3.29e-01 | 100.0% | 60.9% |
| 3471233 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 49.0 | 2.88e-01 | 100.0% | 23.1% |
| 1547989 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 48.0 | 3.40e-01 | 97.3% | 66.1% |
| 3674212 | 5.1.2.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N+INV_N | 0.54 | 47.0 | 3.33e-01 | 97.3% | 61.1% |
| 2392665 | 5084.1.1.12 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Porin_7 | 0.54 | 39.0 | 3.96e-01 | 77.0% | 91.4% |
| 3716903 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.54 | 47.0 | 3.27e-01 | 93.8% | 86.9% |
| 4982831 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 45.0 | 2.88e-01 | 87.6% | 26.8% |
| 3477607 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 49.0 | 2.94e-01 | 100.0% | 32.6% |
| 4027719 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 47.0 | 3.40e-01 | 97.3% | 74.5% |
| 3593405 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.54 | 48.0 | 4.19e-01 | 99.1% | 68.8% |
| 3608636 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 49.0 | 3.03e-01 | 100.0% | 31.5% |
| 3711360 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 3.26e-01 | 87.6% | 83.9% |
| 3414586 | 11.1.1.824 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chitin_bind_4 | 0.53 | 37.0 | 4.10e-01 | 96.5% | 88.2% |
| 3484000 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 48.0 | 2.75e-01 | 100.0% | 21.1% |
| 3402616 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 40.0 | 3.72e-01 | 81.4% | 76.7% |
| 3219424 | 5.1.4.585 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29539, PF29566 | 0.53 | 45.0 | 2.96e-01 | 93.8% | 41.4% |
| 5057645 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.53 | 40.0 | 4.07e-01 | 91.2% | 80.9% |
| 3207726 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 45.0 | 3.26e-01 | 97.3% | 79.4% |
| 3482199 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 47.0 | 3.05e-01 | 99.1% | 45.5% |
| 3743698 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.52 | 45.0 | 3.29e-01 | 96.5% | 90.5% |
| 4318843 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.52 | 43.0 | 4.05e-01 | 93.8% | 82.8% |
| 4992003 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.51 | 42.0 | 4.02e-01 | 90.3% | 80.0% |
| 3902761 | 355.1.1.0 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like | 0.51 | 39.0 | 2.95e-01 | 79.6% | 37.5% |
| 3818341 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.51 | 31.0 | 3.66e-01 | 77.0% | 85.9% |
| 4653627 | 4252.1.1.3 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DA_C | 0.51 | 43.0 | 3.82e-01 | 91.2% | 99.4% |