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SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00011
Bact-VirSR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00011
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.66 | 52.0 | 4.43e-01 | 92.3% | 62.0% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.42e-01 | 100.0% | 55.4% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.64 | 51.0 | 4.87e-01 | 94.2% | 84.1% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.64 | 48.0 | 4.86e-01 | 92.3% | 90.0% |
| 1y6kR01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 4.29e-01 | 98.1% | 53.9% |
| 8os3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 4.32e-01 | 98.1% | 57.6% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 46.0 | 3.40e-01 | 90.4% | 35.3% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 49.0 | 4.09e-01 | 96.2% | 89.8% |
| 2yuwA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 4.03e-01 | 98.1% | 53.1% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.58 | 44.0 | 3.92e-01 | 100.0% | 55.2% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 42.0 | 3.18e-01 | 84.6% | 95.4% |
| 5ejrA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 47.0 | 4.05e-01 | 96.2% | 74.4% |
| 1f6fB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.70e-01 | 90.4% | 48.5% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.44e-01 | 90.4% | 62.3% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.55 | 39.0 | 4.04e-01 | 86.5% | 83.7% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 43.0 | 3.82e-01 | 94.2% | 96.4% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 43.0 | 4.46e-01 | 90.4% | 93.9% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.54 | 43.0 | 3.32e-01 | 100.0% | 54.7% |
| 1xzwA01 | 2.60.40.380 | Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal | 0.54 | 43.0 | 3.52e-01 | 88.5% | 55.1% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.54 | 41.0 | 3.70e-01 | 88.5% | 73.4% |
| 6lnhB01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 43.0 | 2.85e-01 | 90.4% | 33.5% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.17e-01 | 90.4% | 51.8% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 42.0 | 4.20e-01 | 90.4% | 94.5% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.52 | 40.0 | 2.71e-01 | 92.3% | 37.7% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.67e-01 | 98.1% | 60.0% |
| 3lb6D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.60e-01 | 94.2% | 58.7% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 40.0 | 3.95e-01 | 86.5% | 87.9% |
| 1regX00 | 3.30.70.650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation repressor RegA | 0.51 | 37.0 | 3.02e-01 | 82.7% | 75.4% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.48e-01 | 98.1% | 89.6% |
| 4f23A02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.51 | 39.0 | 2.72e-01 | 92.3% | 39.7% |
| 6kjcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 36.0 | 2.25e-01 | 82.7% | 65.6% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 36.0 | 2.46e-01 | 84.6% | 79.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4129992 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.69 | 45.0 | 4.01e-01 | 96.2% | 46.7% |
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.69 | 49.0 | 3.99e-01 | 76.9% | 97.0% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.65 | 51.0 | 5.11e-01 | 94.2% | 92.7% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.64 | 52.0 | 4.57e-01 | 96.2% | 88.2% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 47.0 | 4.80e-01 | 92.3% | 92.0% |
| 3647077 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.58 | 45.0 | 3.04e-01 | 88.5% | 98.3% |
| 3863519 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.58 | 48.0 | 3.87e-01 | 94.2% | 61.0% |
| 3911249 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.57 | 40.0 | 3.41e-01 | 92.3% | 42.1% |
| 5747 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.57 | 46.0 | 4.61e-01 | 100.0% | 92.6% |
| 3254525 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 43.0 | 3.86e-01 | 86.5% | 100.0% |
| 4607892 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 38.0 | 4.12e-01 | 86.5% | 90.0% |
| 5018277 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.56 | 44.0 | 3.61e-01 | 88.5% | 99.0% |
| 5063276 | 302.4.1.2 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › SBP_bac_5 | 0.56 | 44.0 | 3.56e-01 | 92.3% | 52.7% |
| 3914036 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.55 | 43.0 | 3.65e-01 | 96.2% | 82.9% |
| 4961008 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.55 | 44.0 | 2.57e-01 | 100.0% | 53.4% |
| 4519317 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.55 | 43.0 | 3.82e-01 | 94.2% | 90.6% |
| 4547125 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.54 | 42.0 | 4.31e-01 | 98.1% | 92.0% |
| 5012635 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.54 | 42.0 | 2.79e-01 | 94.2% | 30.2% |
| 3620613 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 41.0 | 4.41e-01 | 88.5% | 97.8% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 40.0 | 3.98e-01 | 92.3% | 86.7% |
| 4928516 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 36.0 | 2.88e-01 | 75.0% | 32.2% |
| 3096550 | 4012.1.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C | 0.52 | 39.0 | 4.03e-01 | 100.0% | 97.9% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 2.94e-01 | 86.5% | 50.7% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.51 | 41.0 | 3.45e-01 | 98.1% | 81.9% |
| 5050551 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.51 | 42.0 | 3.12e-01 | 96.2% | 97.3% |