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SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00018
Bact-VirSR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00018
Identity
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 501-590
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21419.3 best | RoxA-like_Cyt-c | 49.1 | 4.70e-13 | 34.4% | 74.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968155 | 107.1.1.19 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C, RoxA-like_Cyt-c | 0.95 | 89.0 | 6.18e-01 | 100.0% | 35.7% |
| 3969231 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.94 | 88.0 | 5.19e-01 | 100.0% | 15.7% |
| 3969701 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.90 | 87.0 | 6.01e-01 | 100.0% | 36.7% |
| 3972593 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.90 | 86.0 | 5.06e-01 | 100.0% | 17.0% |
| 4129571 | 107.1.1.19 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C, RoxA-like_Cyt-c | 0.88 | 84.0 | 5.47e-01 | 100.0% | 32.9% |
| 1088841 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.83 | 79.0 | 5.24e-01 | 100.0% | 48.6% |
D2
medium
residues 31-157
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969702 | 107.1.1.0 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c | 0.84 | 66.0 | 4.92e-01 | 87.4% | 36.1% |
| 3969231 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.81 | 71.0 | 4.48e-01 | 91.3% | 22.5% |
| 3972593 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.81 | 67.0 | 4.21e-01 | 85.8% | 19.6% |
| 3471987 | 325.1.8.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein | 0.55 | 21.0 | 2.96e-01 | 89.8% | 72.7% |
| 4028092 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.53 | 20.0 | 2.87e-01 | 89.8% | 72.7% |
D3
medium
residues 158-197_240-272
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.81 | 46.0 | 4.12e-01 | 100.0% | 41.2% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.69 | 42.0 | 4.28e-01 | 100.0% | 62.5% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.64 | 49.0 | 5.21e-01 | 100.0% | 92.2% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 47.0 | 4.26e-01 | 100.0% | 57.6% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 45.0 | 4.96e-01 | 98.6% | 98.2% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 44.0 | 3.91e-01 | 72.6% | 91.2% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.62 | 48.0 | 4.19e-01 | 100.0% | 56.6% |
| 6vynC01 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.62 | 53.0 | 5.28e-01 | 98.6% | 95.9% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.61 | 37.0 | 3.85e-01 | 98.6% | 64.2% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 39.0 | 3.77e-01 | 98.6% | 57.5% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.59 | 48.0 | 4.73e-01 | 100.0% | 81.8% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.59 | 42.0 | 3.33e-01 | 78.1% | 35.9% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 50.0 | 3.79e-01 | 98.6% | 88.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 34.0 | 3.18e-01 | 91.8% | 44.8% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 47.0 | 4.76e-01 | 100.0% | 90.4% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.57 | 46.0 | 4.77e-01 | 98.6% | 94.1% |
| 1vluA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 49.0 | 3.42e-01 | 100.0% | 51.8% |
| 6zxqA01 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.56 | 42.0 | 3.91e-01 | 80.8% | 100.0% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.56 | 50.0 | 4.63e-01 | 100.0% | 78.9% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.55 | 43.0 | 3.87e-01 | 100.0% | 59.4% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.55 | 49.0 | 4.30e-01 | 100.0% | 68.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 50.0 | 4.35e-01 | 100.0% | 70.6% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 48.0 | 3.31e-01 | 100.0% | 30.1% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.54 | 46.0 | 4.10e-01 | 98.6% | 82.4% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.53 | 40.0 | 3.84e-01 | 100.0% | 69.0% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.53 | 42.0 | 3.78e-01 | 100.0% | 60.7% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.53 | 47.0 | 3.51e-01 | 100.0% | 77.2% |
| 3g80A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 42.0 | 4.25e-01 | 100.0% | 89.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 46.0 | 4.54e-01 | 100.0% | 96.2% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 43.0 | 3.97e-01 | 100.0% | 71.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 46.0 | 4.53e-01 | 100.0% | 96.1% |
| 2qe7G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.50 | 45.0 | 4.08e-01 | 98.6% | 100.0% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 4.13e-01 | 94.5% | 85.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704321 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.72 | 42.0 | 4.02e-01 | 100.0% | 49.4% |
| 1647135 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.69 | 43.0 | 4.27e-01 | 100.0% | 58.2% |
| 3176480 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.65 | 48.0 | 4.52e-01 | 100.0% | 64.0% |
| 3361251 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.64 | 52.0 | 4.87e-01 | 98.6% | 72.2% |
| 3168273 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.63 | 41.0 | 4.35e-01 | 95.9% | 75.4% |
| 3276646 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 47.0 | 3.76e-01 | 100.0% | 42.1% |
| 3495283 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.60 | 42.0 | 3.38e-01 | 71.2% | 81.5% |
| 4156473 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.59 | 47.0 | 4.33e-01 | 100.0% | 66.3% |
| 3642338 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.58 | 47.0 | 4.71e-01 | 100.0% | 85.3% |
| 3734442 | 192.8.1.35 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 | 0.57 | 48.0 | 3.96e-01 | 100.0% | 51.5% |
| 3390728 | 601.19.1.47 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF4745 | 0.57 | 39.0 | 3.27e-01 | 71.2% | 82.4% |
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 41.0 | 4.08e-01 | 98.6% | 74.7% |
| 3208600 | 109.4.1.560 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 | 0.55 | 42.0 | 2.85e-01 | 82.2% | 80.7% |
| 3409871 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 48.0 | 2.83e-01 | 100.0% | 13.6% |
| 4316383 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 48.0 | 4.36e-01 | 100.0% | 87.4% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.52 | 48.0 | 4.76e-01 | 100.0% | 97.3% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.51 | 42.0 | 3.64e-01 | 100.0% | 57.4% |
| 3315495 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.50 | 44.0 | 4.16e-01 | 100.0% | 81.2% |
D4
medium
residues 288-303_318-499
Domain cluster:
representative