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SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00133

Bact-Vir

SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00133

Identity

Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 70.0 6.29e-01 100.0% 88.0%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 68.0 5.66e-01 100.0% 90.4%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 67.0 5.78e-01 100.0% 100.0%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 67.0 6.41e-01 100.0% 88.0%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 65.0 5.69e-01 100.0% 83.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 64.0 6.28e-01 100.0% 96.6%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 61.0 6.18e-01 100.0% 93.8%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 62.0 5.09e-01 100.0% 78.9%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 5.52e-01 100.0% 88.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 62.0 5.44e-01 100.0% 87.7%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 60.0 5.78e-01 100.0% 89.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 60.0 5.64e-01 100.0% 85.9%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.67 55.0 4.74e-01 87.5% 90.1%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 5.64e-01 100.0% 95.6%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 5.51e-01 100.0% 93.5%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 4.95e-01 100.0% 70.9%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 58.0 4.69e-01 100.0% 54.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.18e-01 90.0% 67.5%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.51e-01 96.2% 88.3%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 38.0 4.09e-01 97.5% 75.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.40e-01 100.0% 83.8%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 38.0 4.20e-01 100.0% 83.3%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 4.15e-01 85.0% 99.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 40.0 4.30e-01 81.2% 84.1%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.57 42.0 4.03e-01 95.0% 66.7%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 39.0 3.10e-01 71.2% 96.5%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.84e-01 90.0% 97.5%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 41.0 4.13e-01 86.3% 79.7%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.80e-01 90.0% 84.3%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 44.0 3.14e-01 87.5% 95.9%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.64e-01 80.0% 17.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.55 49.0 3.43e-01 100.0% 43.5%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.85e-01 93.8% 30.6%
7ccbA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 44.0 3.65e-01 90.0% 75.9%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.44e-01 90.0% 74.9%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.54 44.0 3.49e-01 90.0% 55.8%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 46.0 3.67e-01 95.0% 77.8%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.53 45.0 4.08e-01 95.0% 72.3%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.68e-01 90.0% 90.9%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 37.0 3.49e-01 88.7% 59.6%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 46.0 3.93e-01 98.8% 77.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.77e-01 93.8% 88.8%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 47.0 3.14e-01 100.0% 67.4%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.93e-01 92.5% 31.7%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 46.0 3.57e-01 98.8% 81.2%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 3.05e-01 97.5% 35.2%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.73e-01 100.0% 15.8%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.48e-01 95.0% 73.3%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.96e-01 93.8% 46.8%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.82e-01 97.5% 30.9%
1d2sA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.47e-01 97.5% 76.5%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.23e-01 93.8% 68.9%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.93e-01 97.5% 29.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4146498 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.78 70.0 6.53e-01 100.0% 91.0%
3257304 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.77 70.0 6.37e-01 100.0% 88.6%
3701631 220.1.1.200 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_30 0.76 69.0 5.89e-01 100.0% 79.2%
3777243 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.76 68.0 5.73e-01 100.0% 65.9%
3235400 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.76 70.0 6.74e-01 100.0% 91.0%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.75 68.0 5.74e-01 100.0% 75.4%
3258463 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.72e-01 93.8% 84.0%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 5.96e-01 100.0% 85.5%
4927614 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 5.96e-01 100.0% 80.0%
3890750 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 6.35e-01 100.0% 95.6%
3777215 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 6.12e-01 100.0% 86.0%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 66.0 6.37e-01 100.0% 95.6%
3306218 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.73 65.0 5.52e-01 100.0% 86.7%
3452440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 65.0 5.81e-01 100.0% 81.7%
3535499 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 66.0 5.94e-01 100.0% 83.6%
3823929 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.73 65.0 5.71e-01 100.0% 76.7%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 65.0 6.29e-01 100.0% 93.3%
3854547 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.73 65.0 5.69e-01 100.0% 72.5%
3390648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.59e-01 100.0% 74.2%
3570691 220.1.1.208 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.72 64.0 5.79e-01 100.0% 79.1%
3594774 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.22e-01 100.0% 69.3%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.72 64.0 5.89e-01 100.0% 77.1%
4929590 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 64.0 5.51e-01 100.0% 76.0%
3476018 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.71 64.0 5.56e-01 100.0% 68.3%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 65.0 5.65e-01 100.0% 70.0%
3611112 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 63.0 5.05e-01 100.0% 68.1%
3796950 220.1.1.18 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.70 61.0 5.06e-01 100.0% 86.7%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 62.0 5.44e-01 100.0% 94.2%
3705469 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 61.0 4.94e-01 100.0% 68.8%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 62.0 5.58e-01 100.0% 75.5%
3919870 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 62.0 5.45e-01 100.0% 68.3%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 5.79e-01 95.0% 95.3%
3763418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.57e-01 90.0% 81.1%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 61.0 5.62e-01 100.0% 91.4%
3521669 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.69 60.0 5.55e-01 100.0% 82.9%
3887129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 5.89e-01 100.0% 88.9%
3783442 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.68 60.0 4.89e-01 100.0% 67.7%
3515993 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.68 59.0 5.26e-01 100.0% 78.3%
3497290 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 5.36e-01 100.0% 75.4%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.68 59.0 5.11e-01 100.0% 72.3%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 60.0 5.71e-01 100.0% 91.6%
3533183 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 60.0 5.60e-01 100.0% 81.0%
3417244 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.67 59.0 5.60e-01 100.0% 87.4%
3476014 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.67 58.0 5.48e-01 100.0% 87.0%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 58.0 5.22e-01 100.0% 73.0%
3288866 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 5.13e-01 100.0% 70.0%
3199835 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 53.0 5.44e-01 93.8% 92.0%
4034521 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.65 57.0 5.34e-01 100.0% 87.0%
3478678 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 5.47e-01 93.8% 97.3%
4351809 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 40.0 4.47e-01 100.0% 90.0%
1141859 5.1.10.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.58 40.0 4.25e-01 81.2% 80.6%
1879626 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.57 46.0 3.35e-01 88.7% 64.2%
3595708 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.56 49.0 3.11e-01 97.5% 29.8%
3734385 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.56 47.0 2.96e-01 92.5% 34.5%
5012768 5.1.10.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 0.55 38.0 4.18e-01 80.0% 89.2%
1676514 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.55 46.0 2.96e-01 90.0% 25.1%
3788776 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.55 46.0 3.05e-01 92.5% 37.3%
3704178 5.1.4.47 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N 0.55 49.0 3.10e-01 97.5% 28.3%
4989777 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.07e-01 93.8% 82.2%
3484745 5.1.4.313 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.54 46.0 3.07e-01 93.8% 41.0%
5046207 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 3.25e-01 97.5% 38.9%
5079687 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 3.00e-01 96.2% 29.3%
3741960 5.1.4.242 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.53 45.0 2.97e-01 93.8% 39.7%
3891151 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.52 41.0 3.54e-01 86.3% 78.5%
3479018 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.74e-01 92.5% 42.6%
3773287 5.1.3.202 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CNH 0.51 43.0 2.82e-01 92.5% 27.7%
4079885 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.51 35.0 3.40e-01 100.0% 61.1%
4479457 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.51 44.0 3.51e-01 98.8% 79.3%
3576335 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.76e-01 91.3% 24.1%
3629700 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 41.0 2.74e-01 91.3% 24.5%