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SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00190
Bact-VirSR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00190
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-149
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.76 | 54.0 | 4.66e-01 | 74.1% | 52.6% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 42.0 | 5.05e-01 | 75.9% | 81.6% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.74 | 54.0 | 5.86e-01 | 75.9% | 97.9% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.72 | 55.0 | 4.61e-01 | 78.6% | 56.4% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.71 | 41.0 | 5.04e-01 | 77.7% | 90.1% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 51.0 | 4.95e-01 | 75.0% | 73.2% |
| 3llwD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.69 | 56.0 | 4.15e-01 | 86.6% | 38.4% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 47.0 | 4.79e-01 | 89.3% | 71.4% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.68 | 52.0 | 5.05e-01 | 84.8% | 72.2% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 49.0 | 4.99e-01 | 75.9% | 78.6% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 49.0 | 4.72e-01 | 76.8% | 82.3% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 49.0 | 4.91e-01 | 75.9% | 79.1% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 48.0 | 4.27e-01 | 74.1% | 89.8% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.66 | 54.0 | 5.10e-01 | 87.5% | 100.0% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 49.0 | 4.97e-01 | 78.6% | 100.0% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 50.0 | 5.00e-01 | 81.2% | 100.0% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.65 | 45.0 | 4.76e-01 | 70.5% | 90.7% |
| 3gyuA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.64 | 45.0 | 3.48e-01 | 71.4% | 83.5% |
| 1z6oM00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 45.0 | 3.74e-01 | 72.3% | 41.9% |
| 1oxjA02 | 1.25.40.170 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain | 0.64 | 42.0 | 4.27e-01 | 72.3% | 67.9% |
| 1e3gA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.63 | 46.0 | 3.54e-01 | 79.5% | 33.6% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.62 | 45.0 | 3.87e-01 | 74.1% | 86.0% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 45.0 | 4.62e-01 | 76.8% | 79.2% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 44.0 | 4.36e-01 | 75.9% | 76.9% |
| 2pybA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 41.0 | 3.77e-01 | 71.4% | 92.1% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 49.0 | 5.01e-01 | 90.2% | 96.4% |
| 3chtA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.59 | 47.0 | 3.49e-01 | 86.6% | 35.9% |
| 2r40D00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.58 | 46.0 | 3.67e-01 | 86.6% | 94.0% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 40.0 | 4.07e-01 | 71.4% | 78.7% |
| 1v9dB00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.57 | 49.0 | 3.53e-01 | 92.9% | 79.1% |
| 3fhnA02 | 1.20.58.1420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B | 0.57 | 44.0 | 4.35e-01 | 82.1% | 98.3% |
| 4jioA02 | 1.20.140.50 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains | 0.57 | 40.0 | 3.71e-01 | 73.2% | 88.8% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.56 | 41.0 | 3.47e-01 | 77.7% | 82.5% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 41.0 | 3.30e-01 | 79.5% | 90.7% |
| 3cx3B01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 41.0 | 3.67e-01 | 79.5% | 100.0% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 39.0 | 3.40e-01 | 86.6% | 54.8% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3795757 | 603.1.1.97 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE | 0.84 | 61.0 | 4.51e-01 | 75.0% | 60.0% |
| 3428894 | 604.5.1.39 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 | 0.79 | 56.0 | 5.17e-01 | 72.3% | 87.1% |
| 3562136 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.77 | 56.0 | 4.97e-01 | 75.9% | 72.9% |
| 4971843 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 55.0 | 6.12e-01 | 75.9% | 94.4% |
| 3829132 | 604.3.1.35 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF6857 | 0.75 | 57.0 | 5.17e-01 | 78.6% | 86.9% |
| 3462175 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.75 | 54.0 | 5.16e-01 | 75.0% | 73.1% |
| 3243897 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.75 | 56.0 | 5.17e-01 | 77.7% | 94.3% |
| 3610620 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 56.0 | 5.56e-01 | 77.7% | 84.3% |
| 3273217 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 50.0 | 5.42e-01 | 71.4% | 83.2% |
| 3504347 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.73 | 51.0 | 5.49e-01 | 71.4% | 100.0% |
| 3184584 | 603.1.1.100 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 | 0.72 | 52.0 | 4.90e-01 | 75.0% | 74.8% |
| 4996069 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.72 | 51.0 | 5.67e-01 | 73.2% | 92.2% |
| 3405261 | 604.22.1.1 ↗ | alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N | 0.72 | 55.0 | 5.44e-01 | 82.1% | 75.8% |
| 3482265 | 601.19.1.36 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF4455 | 0.72 | 65.0 | 5.45e-01 | 100.0% | 92.6% |
| 4013992 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.72 | 53.0 | 4.70e-01 | 77.7% | 69.4% |
| 3271959 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 48.0 | 5.13e-01 | 70.5% | 80.0% |
| 3547405 | 604.1.1.24 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 | 0.71 | 55.0 | 5.16e-01 | 82.1% | 95.6% |
| 3631429 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 52.0 | 4.63e-01 | 77.7% | 76.2% |
| 5078792 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.70 | 53.0 | 5.41e-01 | 79.5% | 80.9% |
| 4683248 | 5086.1.1.66 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR | 0.69 | 53.0 | 4.94e-01 | 81.2% | 70.0% |
| 3197870 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 53.0 | 5.01e-01 | 81.2% | 87.4% |
| 3318923 | 603.1.1.124 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE, V-SNARE_C | 0.68 | 50.0 | 4.48e-01 | 75.9% | 60.6% |
| 4008609 | 1203.1.2.7 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR | 0.68 | 51.0 | 4.77e-01 | 79.5% | 70.7% |
| 5005724 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.68 | 58.0 | 4.58e-01 | 95.5% | 45.1% |
| 3212811 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.67 | 50.0 | 4.75e-01 | 76.8% | 93.8% |
| 3878295 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.67 | 47.0 | 4.26e-01 | 71.4% | 75.3% |
| 3881581 | 310.2.1.11 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF4456 | 0.67 | 60.0 | 5.31e-01 | 99.1% | 100.0% |
| 3397195 | 603.1.1.134 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Wbp11 | 0.67 | 52.0 | 4.90e-01 | 83.9% | 68.9% |
| 1145703 | 604.5.1.3 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C | 0.66 | 47.0 | 5.12e-01 | 74.1% | 91.5% |
| 4283760 | 1203.1.2.7 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR | 0.66 | 51.0 | 4.80e-01 | 83.0% | 71.4% |
| 3521280 | 604.1.1.256 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Wbp11 | 0.66 | 52.0 | 4.88e-01 | 85.7% | 69.6% |
| 3946576 | 5086.1.1.66 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR | 0.66 | 50.0 | 4.70e-01 | 80.4% | 72.6% |
| 4957690 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.66 | 49.0 | 4.79e-01 | 79.5% | 72.8% |
| 3577937 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 55.0 | 5.46e-01 | 90.2% | 98.3% |
| 4974685 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.64 | 43.0 | 4.88e-01 | 70.5% | 92.8% |
| 3485540 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.63 | 57.0 | 4.92e-01 | 100.0% | 78.9% |
| 2099726 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.63 | 44.0 | 4.46e-01 | 71.4% | 88.1% |
| 3414672 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 53.0 | 4.43e-01 | 91.1% | 94.2% |
| 5073374 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 46.0 | 5.06e-01 | 79.5% | 100.0% |
| 3687029 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.61 | 45.0 | 4.82e-01 | 81.2% | 91.6% |
| 3925845 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.61 | 49.0 | 3.53e-01 | 86.6% | 69.4% |
| 3393765 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.61 | 51.0 | 4.01e-01 | 91.1% | 97.9% |
| 3618773 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.60 | 45.0 | 3.57e-01 | 79.5% | 86.8% |
| 3877055 | 3914.1.1.1 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin | 0.60 | 46.0 | 3.18e-01 | 82.1% | 29.0% |
| 3567180 | 4177.1.1.61 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C | 0.60 | 51.0 | 3.99e-01 | 93.8% | 99.6% |
| 3809724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 51.0 | 4.75e-01 | 94.6% | 90.0% |
| 3906366 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.59 | 50.0 | 4.42e-01 | 91.1% | 64.4% |
| 3466658 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 46.0 | 3.31e-01 | 90.2% | 32.1% |