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SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00226
Bact-VirSR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00226
Identity
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 100-165
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nx8B00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 62.0 | 4.14e-01 | 100.0% | 39.4% |
| 4ragA02 | 1.10.10.430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily | 0.64 | 53.0 | 5.35e-01 | 97.0% | 92.6% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.64 | 50.0 | 4.48e-01 | 89.4% | 74.7% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.64 | 53.0 | 5.18e-01 | 95.5% | 87.7% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 49.0 | 5.13e-01 | 89.4% | 100.0% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 53.0 | 5.17e-01 | 100.0% | 89.0% |
| 1abvA00 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 50.0 | 4.48e-01 | 100.0% | 98.1% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.60 | 41.0 | 3.58e-01 | 71.2% | 90.2% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 49.0 | 4.04e-01 | 100.0% | 62.8% |
| 2mw2A00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.59 | 43.0 | 4.28e-01 | 100.0% | 77.6% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 42.0 | 3.53e-01 | 81.8% | 89.3% |
| 2e5zA01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.58 | 45.0 | 4.65e-01 | 95.5% | 100.0% |
| 1hbgA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 47.0 | 3.84e-01 | 100.0% | 93.9% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.57 | 36.0 | 3.63e-01 | 81.8% | 62.7% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.57 | 41.0 | 3.12e-01 | 78.8% | 93.8% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 48.0 | 3.81e-01 | 100.0% | 86.0% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 41.0 | 4.34e-01 | 95.5% | 91.1% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.56 | 48.0 | 4.16e-01 | 98.5% | 62.3% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 35.0 | 3.41e-01 | 80.3% | 56.0% |
| 3vxcA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.12e-01 | 86.4% | 79.0% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 50.0 | 3.70e-01 | 100.0% | 47.5% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 44.0 | 3.63e-01 | 98.5% | 96.6% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.55 | 46.0 | 3.98e-01 | 95.5% | 66.0% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 37.0 | 3.09e-01 | 71.2% | 94.1% |
| 5afdA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 2.85e-01 | 97.0% | 19.7% |
| 1ux5A03 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.54 | 41.0 | 2.86e-01 | 83.3% | 68.2% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 38.0 | 3.53e-01 | 74.2% | 69.0% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.54 | 44.0 | 3.93e-01 | 95.5% | 70.7% |
| 3hi0A02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.53 | 40.0 | 3.06e-01 | 86.4% | 70.5% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 3.70e-01 | 98.5% | 75.8% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.53 | 37.0 | 3.47e-01 | 74.2% | 67.1% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 44.0 | 4.24e-01 | 100.0% | 82.1% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 39.0 | 3.79e-01 | 83.3% | 73.3% |
| 5al9A01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.52 | 45.0 | 3.56e-01 | 100.0% | 82.1% |
| 6mcjA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.52 | 43.0 | 3.48e-01 | 98.5% | 46.9% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.52 | 43.0 | 4.25e-01 | 98.5% | 90.4% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 44.0 | 3.44e-01 | 100.0% | 100.0% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 43.0 | 3.46e-01 | 100.0% | 94.6% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.74e-01 | 98.5% | 76.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4496765 | 4230.1.1.0 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain | 0.72 | 64.0 | 5.62e-01 | 97.0% | 77.9% |
| 3477054 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 56.0 | 5.74e-01 | 84.8% | 100.0% |
| 4179892 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.72 | 64.0 | 4.14e-01 | 100.0% | 34.8% |
| 3640046 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.71 | 61.0 | 4.57e-01 | 100.0% | 64.0% |
| 3724812 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.71 | 60.0 | 4.01e-01 | 100.0% | 63.4% |
| 3208435 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 60.0 | 4.40e-01 | 100.0% | 57.4% |
| 4028663 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.67 | 57.0 | 4.88e-01 | 100.0% | 62.6% |
| 4020856 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.65 | 45.0 | 3.60e-01 | 72.7% | 44.4% |
| 3973712 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.64 | 46.0 | 3.36e-01 | 77.3% | 36.9% |
| 3188109 | 102.5.1.9 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 | 0.64 | 49.0 | 4.51e-01 | 86.4% | 82.2% |
| 4137678 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 50.0 | 5.26e-01 | 98.5% | 96.7% |
| 3542152 | 397.7.1.7 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP | 0.63 | 54.0 | 4.97e-01 | 100.0% | 87.8% |
| 3257558 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.62 | 51.0 | 4.88e-01 | 95.5% | 78.8% |
| 3584520 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 55.0 | 4.65e-01 | 100.0% | 70.0% |
| 5052695 | 102.1.1.119 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 | 0.60 | 47.0 | 3.87e-01 | 84.8% | 46.7% |
| 5083424 | 102.1.1.119 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 | 0.60 | 48.0 | 4.70e-01 | 90.9% | 82.7% |
| 2394140 | 1203.1.2.1 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 | 0.59 | 53.0 | 3.92e-01 | 100.0% | 72.2% |
| 3499876 | 574.1.1.0 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) | 0.59 | 50.0 | 4.86e-01 | 100.0% | 89.3% |
| 3935633 | 1203.1.2.1 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 | 0.59 | 52.0 | 3.80e-01 | 100.0% | 64.3% |
| 3859081 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 50.0 | 3.54e-01 | 97.0% | 82.9% |
| 3715315 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.59 | 44.0 | 2.96e-01 | 81.8% | 36.2% |
| 3602632 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.58 | 50.0 | 3.71e-01 | 100.0% | 63.2% |
| 3960157 | 531.2.1.0 ↗ | alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG | 0.57 | 37.0 | 3.82e-01 | 89.4% | 71.7% |
| 3545789 | 3542.1.1.12 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › TM7S3_TM198 | 0.56 | 42.0 | 3.12e-01 | 87.9% | 96.6% |
| 3229806 | 6157.1.1.1 ↗ | alpha bundles › GKAP homology domain 1 › GKAP homology domain 1 › GKAP homology domain 1 › GKAP | 0.55 | 38.0 | 3.14e-01 | 72.7% | 40.9% |
| 5052694 | 102.1.1.119 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 | 0.55 | 45.0 | 4.36e-01 | 100.0% | 85.0% |
| 3648942 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.52 | 44.0 | 3.49e-01 | 100.0% | 85.2% |
| 4446713 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.52 | 42.0 | 4.11e-01 | 98.5% | 81.3% |
| 4596030 | 5086.1.1.218 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › MSP1_C | 0.52 | 38.0 | 3.27e-01 | 78.8% | 80.9% |
| 4628458 | 604.1.1.226 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26877 | 0.52 | 43.0 | 4.00e-01 | 95.5% | 96.5% |
| 137999 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.52 | 45.0 | 3.47e-01 | 98.5% | 94.1% |
| 4016111 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.51 | 42.0 | 4.04e-01 | 92.4% | 88.0% |
| 4983638 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.50 | 39.0 | 3.87e-01 | 93.9% | 82.6% |
| 3635930 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.50 | 42.0 | 3.33e-01 | 100.0% | 91.0% |
| 3691300 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.50 | 40.0 | 3.92e-01 | 92.4% | 85.3% |
D2
medium
residues 42-96
Domain cluster:
representative