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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00009
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00009
Identity
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-69
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00226__D3-50
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tyeA00 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.54 | 42.0 | 2.60e-01 | 90.3% | 40.9% |
| 2fgtA02 | 3.10.450.310 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 33.0 | 3.14e-01 | 77.4% | 50.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3023952 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 3.77e-01 | 95.2% | 51.3% |
| 3089543 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.53 | 39.0 | 2.84e-01 | 90.3% | 24.6% |
| 4100162 | 378.1.1.36 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF29604 | 0.51 | 34.0 | 3.05e-01 | 75.8% | 47.8% |
| 5068820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.24e-01 | 82.3% | 58.7% |