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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00051

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00051

Identity

Kingdom:
phage

Quality

85.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 33.0 4.22e-01 71.3% 71.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.72 40.0 5.17e-01 97.9% 100.0%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 3.79e-01 100.0% 48.2%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.67 34.0 3.43e-01 91.5% 47.9%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 43.0 5.04e-01 100.0% 94.0%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 37.0 2.59e-01 80.9% 18.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 35.0 4.22e-01 74.5% 86.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.95e-01 100.0% 100.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 39.0 3.03e-01 98.9% 29.1%
2m4vA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.60 28.0 3.04e-01 80.9% 50.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 39.0 3.44e-01 83.0% 47.4%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.55 29.0 3.80e-01 91.5% 100.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 35.0 4.07e-01 98.9% 96.7%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 41.0 4.04e-01 83.0% 75.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 35.0 4.04e-01 84.0% 94.0%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 40.0 3.85e-01 78.7% 86.2%
6wy9B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.53 38.0 3.87e-01 83.0% 76.8%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.56e-01 81.9% 66.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 40.0 3.68e-01 85.1% 99.2%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.52e-01 92.6% 62.6%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 31.0 3.33e-01 92.6% 70.7%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 39.0 3.47e-01 84.0% 68.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281614 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 79.0 7.57e-01 98.9% 95.2%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 47.0 5.85e-01 97.9% 95.0%
3616622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 49.0 5.87e-01 100.0% 95.2%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 43.0 4.58e-01 100.0% 63.5%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 43.0 5.50e-01 92.6% 100.0%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.66 43.0 4.54e-01 100.0% 74.1%
4456732 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 35.0 3.77e-01 73.4% 61.3%
4380562 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 42.0 3.26e-01 98.9% 33.5%
3278827 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.73e-01 98.9% 89.4%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 34.0 4.14e-01 96.8% 91.7%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 34.0 3.97e-01 96.8% 84.6%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 34.0 3.95e-01 75.5% 86.2%
4606688 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 37.0 4.05e-01 86.2% 84.0%
4408024 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.55 32.0 3.90e-01 96.8% 90.0%
3967545 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 43.0 3.60e-01 86.2% 78.8%
4346153 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 42.0 3.76e-01 86.2% 92.6%
3953498 4.1.1.439 ↗ beta barrels › SH3 › SH3 › SH3 › PF26205 0.52 37.0 4.01e-01 100.0% 92.0%
141833 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.51 38.0 4.04e-01 98.9% 88.2%
169882 10.1.1.32 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.50 45.0 3.56e-01 100.0% 61.0%