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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00058

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00058

Identity

Kingdom:
phage

Quality

93.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-44_84-111
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.87 82.0 5.96e-01 100.0% 64.2%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.87 79.0 5.97e-01 97.2% 68.2%
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 79.0 5.82e-01 100.0% 66.5%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 79.0 5.57e-01 100.0% 57.9%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 79.0 5.78e-01 100.0% 66.3%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 73.0 5.22e-01 100.0% 59.3%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 67.0 5.16e-01 100.0% 67.6%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 57.0 4.56e-01 90.3% 68.1%
7tuvA01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 33.0 3.03e-01 100.0% 34.7%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 30.0 2.79e-01 100.0% 33.7%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 30.0 2.49e-01 100.0% 27.8%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.50 38.0 3.43e-01 98.6% 59.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945023 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.90 85.0 6.03e-01 100.0% 60.0%
3966805 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.87 81.0 5.88e-01 100.0% 63.9%
3958126 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.86 79.0 5.61e-01 100.0% 57.5%
5058618 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.86 73.0 5.54e-01 91.7% 64.8%
1674686 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.86 79.0 5.85e-01 100.0% 66.9%
163278 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.86 79.0 5.56e-01 100.0% 57.1%
976738 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 76.0 5.42e-01 97.2% 57.0%
2877254 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 77.0 5.64e-01 100.0% 61.6%
3282976 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.84 77.0 5.64e-01 100.0% 65.6%
4996864 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.84 77.0 5.71e-01 100.0% 66.5%
1296 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.79 73.0 5.22e-01 100.0% 59.3%
1107389 10.12.1.24 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FdtA 0.72 67.0 5.19e-01 100.0% 68.5%
4969555 10.12.1.100 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.67 58.0 4.55e-01 94.4% 66.9%
3268771 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 31.0 2.60e-01 100.0% 30.8%
D2 medium residues 45-83_112-166
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00908.24 best dTDP_sugar_isom 47.7 2.00e-12 60.6% 30.4%
PF00908.24 dTDP_sugar_isom 33.1 6.40e-08 43.6% 25.0%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.95 92.0 7.19e-01 100.0% 72.0%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.95 92.0 6.83e-01 100.0% 62.4%
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.94 91.0 7.13e-01 100.0% 71.1%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.91 86.0 6.54e-01 100.0% 63.4%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.90 87.0 6.78e-01 100.0% 68.8%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.90 76.0 6.23e-01 88.3% 73.9%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.84 65.0 5.45e-01 80.9% 64.9%
1y3tA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.83 68.0 5.43e-01 86.2% 75.3%
5tpvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.82 64.0 5.51e-01 80.9% 69.6%
5cu1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 60.0 4.60e-01 77.7% 45.2%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 65.0 5.65e-01 88.3% 79.7%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 61.0 5.25e-01 86.2% 73.9%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 53.0 4.75e-01 73.4% 69.8%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 67.0 5.62e-01 98.9% 76.1%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 66.0 5.46e-01 98.9% 73.1%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 63.0 4.93e-01 98.9% 74.6%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 59.0 4.91e-01 100.0% 74.4%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 60.0 4.17e-01 100.0% 40.9%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 47.0 4.22e-01 83.0% 72.5%
3lb9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.58 51.0 4.13e-01 97.9% 58.8%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.57 50.0 4.80e-01 96.8% 84.5%
3myxA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 3.80e-01 92.6% 60.0%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 44.0 3.99e-01 86.2% 67.7%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.79e-01 84.0% 66.9%
2mhfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.78e-01 80.9% 84.4%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.91e-01 86.2% 72.3%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 49.0 4.65e-01 100.0% 84.7%
2je8B05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.72e-01 91.5% 71.9%
1hw5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.87e-01 85.1% 74.4%
3clpC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.83e-01 86.2% 66.2%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.30e-01 87.2% 65.0%
2mngA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.60e-01 100.0% 57.3%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.83e-01 97.9% 56.8%
4i2oA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.91e-01 86.2% 78.8%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.82e-01 86.2% 76.8%
1ne6A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.73e-01 81.9% 63.1%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.85e-01 93.6% 79.6%
2hjiA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.14e-01 93.6% 45.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958126 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.98 96.0 7.11e-01 100.0% 63.5%
3966805 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.97 94.0 7.25e-01 100.0% 69.4%
4945023 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.96 93.0 7.07e-01 100.0% 67.4%
163278 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.95 92.0 6.82e-01 100.0% 61.5%
3282976 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.95 92.0 7.09e-01 100.0% 68.9%
976738 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.95 91.0 6.83e-01 100.0% 63.0%
1674686 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.94 91.0 7.15e-01 100.0% 71.5%
2877254 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.93 89.0 6.87e-01 100.0% 67.6%
1296 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.90 86.0 6.54e-01 100.0% 63.4%
169093 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.90 76.0 6.23e-01 88.3% 73.9%
1331 10.12.1.31 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.85 67.0 5.75e-01 81.9% 74.3%
1107389 10.12.1.24 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FdtA 0.84 65.0 5.49e-01 80.9% 65.8%
1954751 10.12.1.24 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FdtA 0.82 64.0 5.51e-01 80.9% 69.6%
1284995 10.12.1.24 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › FdtA 0.81 62.0 5.42e-01 80.9% 70.6%
3726944 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 61.0 5.21e-01 80.9% 53.8%
5055563 10.12.1.49 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 0.75 54.0 4.97e-01 74.5% 64.2%
3425621 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 62.0 5.36e-01 87.2% 69.3%
4236729 10.12.1.33 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth 0.75 53.0 4.69e-01 73.4% 64.4%
3700085 10.12.1.15 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.75 54.0 4.25e-01 74.5% 50.3%
3671872 10.12.1.49 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 0.75 62.0 5.47e-01 87.2% 71.5%
3940507 10.12.1.38 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.75 69.0 5.13e-01 97.9% 66.8%
3621201 10.12.1.38 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PCO_ADO 0.74 69.0 4.97e-01 100.0% 57.6%
3988697 10.12.1.31 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.73 67.0 5.49e-01 100.0% 72.0%
5030047 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.72 65.0 6.23e-01 100.0% 84.8%
4104751 10.12.1.15 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.67 54.0 4.33e-01 88.3% 61.1%
3974326 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 57.0 5.13e-01 97.9% 72.8%
4961997 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 49.0 5.04e-01 97.9% 91.1%
3701186 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.61 51.0 4.76e-01 90.4% 83.5%
4990898 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 48.0 4.83e-01 94.7% 86.3%
4972680 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 49.0 4.93e-01 93.6% 89.5%
2814707 11.1.1.233 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.59 40.0 4.17e-01 100.0% 77.4%
3172835 10.12.1.10 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC,JmjN 0.58 52.0 3.49e-01 96.8% 45.1%
5022902 10.11.1.0 beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain 0.58 39.0 4.38e-01 93.6% 100.0%
3929117 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.57 46.0 4.45e-01 89.4% 86.4%
3212025 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 4.55e-01 98.9% 86.0%
151244 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 43.0 3.68e-01 83.0% 76.7%
3838433 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 46.0 4.51e-01 95.7% 86.7%
3463871 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 47.0 3.91e-01 97.9% 80.6%
3489918 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 42.0 3.23e-01 90.4% 55.4%
5050398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.89e-01 87.2% 80.0%
5070733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.11e-01 90.4% 88.0%
3961820 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.51 42.0 4.05e-01 93.6% 78.2%
3955793 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.50 42.0 3.76e-01 93.6% 85.9%