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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00060
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00060
Identity
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-83
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 41.0 | 4.76e-01 | 91.8% | 95.8% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 44.0 | 4.86e-01 | 93.2% | 96.4% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.88e-01 | 91.8% | 94.8% |
| 1xf1A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.61 | 53.0 | 4.26e-01 | 100.0% | 89.2% |
| 4yn3A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.57 | 48.0 | 4.06e-01 | 98.6% | 100.0% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 35.0 | 3.38e-01 | 90.4% | 54.1% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.54 | 35.0 | 3.97e-01 | 91.8% | 100.0% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 37.0 | 3.36e-01 | 76.7% | 81.5% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 3.92e-01 | 95.9% | 85.2% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.52 | 37.0 | 3.75e-01 | 94.5% | 76.7% |
| 1hpgA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 38.0 | 3.49e-01 | 79.5% | 79.8% |
| 3dkxA01 | 3.40.1310.30 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.51 | 40.0 | 3.39e-01 | 89.0% | 82.8% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 41.0 | 3.84e-01 | 90.4% | 72.2% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.50 | 39.0 | 3.35e-01 | 86.3% | 91.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979842 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.66 | 45.0 | 5.00e-01 | 91.8% | 94.5% |
| 4116921 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.65 | 39.0 | 4.21e-01 | 86.3% | 71.7% |
| 25624 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.63 | 43.0 | 4.83e-01 | 91.8% | 100.0% |
| 3599465 | 4.18.1.0 ↗ | beta barrels › SH3 › Plus3 › Plus3 | 0.56 | 49.0 | 4.00e-01 | 100.0% | 88.6% |
| 4033907 | 4.1.1.280 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4176 | 0.56 | 43.0 | 3.98e-01 | 90.4% | 65.3% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 45.0 | 4.14e-01 | 93.2% | 87.4% |
| 3794167 | 376.1.3.30 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF | 0.53 | 38.0 | 3.48e-01 | 82.2% | 56.6% |
| 3966288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.55e-01 | 87.7% | 97.4% |
| 4988402 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.51 | 38.0 | 3.72e-01 | 89.0% | 75.0% |
| 5058926 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.50 | 36.0 | 3.58e-01 | 87.7% | 74.7% |
| 1146564 | 11.1.1.183 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 | 0.50 | 39.0 | 3.38e-01 | 86.3% | 95.0% |
| 5039890 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.50 | 34.0 | 2.79e-01 | 75.3% | 34.7% |
D2
high
residues 93-106_147-214
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rp5A01 | 2.20.70.70 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.73 | 33.0 | 4.66e-01 | 72.0% | 97.2% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.58 | 46.0 | 3.41e-01 | 90.2% | 62.9% |
| 1eerC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.39e-01 | 89.0% | 96.9% |
| 5erdB05 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 43.0 | 4.14e-01 | 89.0% | 98.9% |
| 1szqA02 | 3.30.1330.120 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD | 0.53 | 41.0 | 3.55e-01 | 87.8% | 88.0% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 36.0 | 3.70e-01 | 70.7% | 100.0% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.52 | 36.0 | 3.03e-01 | 72.0% | 88.4% |
| 1amiA04 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.52 | 36.0 | 2.70e-01 | 96.3% | 26.7% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.52 | 45.0 | 4.35e-01 | 100.0% | 89.4% |
| 3ck2A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 37.0 | 2.86e-01 | 86.6% | 35.1% |
| 7k7jA02 | 2.60.40.1770 | Mainly Beta › Sandwich › Immunoglobulin-like › ephrin a2 ectodomain | 0.51 | 30.0 | 3.39e-01 | 97.6% | 77.4% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 38.0 | 2.58e-01 | 81.7% | 34.2% |
| 4aefA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.83e-01 | 90.2% | 95.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602148 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 3.74e-01 | 72.0% | 92.0% |
| 4296692 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 45.0 | 3.73e-01 | 89.0% | 80.6% |
| 3977273 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.55 | 35.0 | 3.03e-01 | 100.0% | 38.6% |
| 5053320 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.54 | 37.0 | 3.21e-01 | 70.7% | 94.1% |
| 4025325 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.54 | 30.0 | 3.44e-01 | 81.7% | 76.4% |
| 3741869 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.53 | 43.0 | 3.54e-01 | 91.5% | 95.6% |
| 4517494 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.52 | 30.0 | 2.69e-01 | 82.9% | 35.4% |
| 4001758 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 34.0 | 2.78e-01 | 75.6% | 32.9% |
| 7871 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.51 | 37.0 | 2.86e-01 | 86.6% | 35.3% |
| 3391671 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.51 | 35.0 | 2.98e-01 | 74.4% | 96.1% |
| 3231541 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 36.0 | 2.50e-01 | 75.6% | 33.7% |
| 3192570 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.50 | 40.0 | 2.71e-01 | 92.7% | 33.3% |