←Back to structures
SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00062
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00062
Identity
- Kingdom:
- phage
Quality
66.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-62
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 41.0 | 2.46e-01 | 71.7% | 75.6% |
| 2b81C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.60 | 35.0 | 2.24e-01 | 71.7% | 11.0% |
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.54 | 38.0 | 2.62e-01 | 75.0% | 42.5% |
| 5c9iA02 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.54 | 37.0 | 2.70e-01 | 78.3% | 27.2% |
| 1q16A10 | 1.20.1700.20 | Mainly Alpha › Up-down Bundle › AF1104-like › | 0.50 | 34.0 | 3.13e-01 | 73.3% | 84.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.82 | 67.0 | 5.06e-01 | 86.7% | 53.1% |
| 3781291 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.75 | 63.0 | 5.17e-01 | 88.3% | 54.0% |
| 4112182 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 60.0 | 4.81e-01 | 90.0% | 61.9% |
| 3669260 | 192.2.1.35 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Hobbit | 0.72 | 51.0 | 4.53e-01 | 91.7% | 52.9% |
| 5041799 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.70 | 61.0 | 4.57e-01 | 95.0% | 45.7% |
| 3394225 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.68 | 60.0 | 4.82e-01 | 100.0% | 51.3% |
| 5042731 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.66 | 52.0 | 3.44e-01 | 88.3% | 79.2% |
| 3369452 | 310.2.1.38 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Hobbit | 0.66 | 52.0 | 4.63e-01 | 91.7% | 58.9% |
| 5032186 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.65 | 46.0 | 4.22e-01 | 73.3% | 70.7% |
| 3293516 | 4953.1.1.23 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › YIF1 | 0.65 | 55.0 | 3.71e-01 | 90.0% | 44.5% |
| 3341391 | 150.5.1.81 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Hobbit | 0.64 | 50.0 | 4.48e-01 | 91.7% | 60.0% |
| 3583674 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.61 | 47.0 | 3.74e-01 | 100.0% | 40.8% |
| 4031693 | 2498.1.1.7 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N | 0.59 | 52.0 | 2.97e-01 | 98.3% | 54.3% |