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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00092
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00092
Identity
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-61
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 55.0 | 5.05e-01 | 98.3% | 98.8% |
| 2ej4A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 48.0 | 4.33e-01 | 86.7% | 90.6% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.23e-01 | 95.0% | 99.1% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.51e-01 | 100.0% | 94.9% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 48.0 | 4.29e-01 | 95.0% | 93.5% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.37e-01 | 100.0% | 92.9% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 46.0 | 4.09e-01 | 100.0% | 57.4% |
| 1x31B02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.58 | 48.0 | 3.73e-01 | 100.0% | 56.5% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.28e-01 | 96.7% | 100.0% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.57 | 42.0 | 3.28e-01 | 100.0% | 33.1% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.56 | 44.0 | 4.38e-01 | 93.3% | 85.7% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.55 | 44.0 | 4.02e-01 | 91.7% | 98.8% |
| 3ramA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.67e-01 | 96.7% | 98.3% |
| 1gtdA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.53 | 40.0 | 3.80e-01 | 91.7% | 100.0% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 43.0 | 3.83e-01 | 100.0% | 65.6% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 3.77e-01 | 95.0% | 95.8% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.40e-01 | 88.3% | 100.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3918288 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.79 | 58.0 | 4.90e-01 | 100.0% | 48.4% |
| 3483496 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.78 | 54.0 | 6.06e-01 | 100.0% | 97.8% |
| 4289160 | 3397.1.1.1 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 | 0.77 | 69.0 | 6.12e-01 | 100.0% | 75.3% |
| 5202 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.61 | 52.0 | 4.49e-01 | 100.0% | 94.0% |
| 3784545 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 3.87e-01 | 98.3% | 52.4% |
| 3857592 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.59 | 50.0 | 4.43e-01 | 98.3% | 92.2% |
| 4015965 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 49.0 | 3.95e-01 | 100.0% | 48.3% |
| 3695272 | 221.1.1.93 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 | 0.58 | 48.0 | 3.79e-01 | 100.0% | 43.0% |
| 3914893 | 4004.1.1.4 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › CERK_C | 0.58 | 48.0 | 3.31e-01 | 100.0% | 95.0% |
| 4008166 | 3115.1.1.10 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 | 0.57 | 47.0 | 4.17e-01 | 98.3% | 66.3% |
| 3590675 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 3.71e-01 | 100.0% | 45.4% |
| 3372009 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 44.0 | 4.00e-01 | 91.7% | 97.6% |
| 4936959 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.55 | 47.0 | 4.00e-01 | 100.0% | 93.3% |
| 332301 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.53 | 42.0 | 3.61e-01 | 95.0% | 96.3% |
| 4204424 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 41.0 | 3.59e-01 | 98.3% | 61.9% |
| 4028909 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 42.0 | 3.47e-01 | 100.0% | 49.6% |
| 4962205 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 43.0 | 3.55e-01 | 100.0% | 56.5% |
| 3452041 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 35.0 | 2.36e-01 | 75.0% | 74.4% |