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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00107
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00107
Identity
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-58
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.77 | 54.0 | 4.44e-01 | 72.5% | 48.2% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.67 | 42.0 | 3.80e-01 | 100.0% | 47.1% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 51.0 | 4.60e-01 | 100.0% | 78.3% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 47.0 | 3.65e-01 | 100.0% | 55.1% |
| 2mjfB00 | 1.20.1440.260 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 41.0 | 3.45e-01 | 74.5% | 45.3% |
| 1t9hA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.57 | 39.0 | 3.61e-01 | 72.5% | 85.3% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.56 | 46.0 | 4.22e-01 | 100.0% | 94.5% |
| 3mw6B00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.56 | 37.0 | 3.14e-01 | 74.5% | 37.2% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.56 | 44.0 | 3.94e-01 | 94.1% | 60.5% |
| 1re0B02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.56 | 40.0 | 3.20e-01 | 80.4% | 40.0% |
| 6pe0E01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 43.0 | 4.27e-01 | 100.0% | 86.8% |
| 3e0zA00 | 1.20.58.1400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Domain of unknown function DUF3837 | 0.55 | 44.0 | 3.70e-01 | 100.0% | 55.1% |
| 4pswA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 37.0 | 3.66e-01 | 82.4% | 66.7% |
| 2r0rB00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 41.0 | 3.73e-01 | 94.1% | 61.5% |
| 3sk9A00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.52 | 41.0 | 2.73e-01 | 92.2% | 82.2% |
| 5jxxA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.52 | 40.0 | 3.77e-01 | 92.2% | 69.7% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.22e-01 | 78.4% | 78.6% |
| 2k8oA00 | 1.20.5.2120 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 40.0 | 3.87e-01 | 96.1% | 80.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3430243 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.74 | 65.0 | 5.63e-01 | 100.0% | 66.3% |
| 3718312 | 604.1.1.118 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N | 0.68 | 47.0 | 3.38e-01 | 72.5% | 61.4% |
| 3587546 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.66 | 55.0 | 4.00e-01 | 100.0% | 88.1% |
| 3727291 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 56.0 | 5.05e-01 | 100.0% | 68.0% |
| 4011325 | 168.1.1.0 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain | 0.66 | 45.0 | 3.17e-01 | 72.5% | 23.0% |
| 3176652 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.66 | 53.0 | 4.77e-01 | 100.0% | 62.5% |
| 3412463 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.65 | 44.0 | 4.76e-01 | 70.6% | 92.5% |
| 3703542 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 43.0 | 3.17e-01 | 72.5% | 25.0% |
| 4037687 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.64 | 44.0 | 4.05e-01 | 78.4% | 54.3% |
| 3945531 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.63 | 42.0 | 3.87e-01 | 70.6% | 52.9% |
| 1927453 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.62 | 42.0 | 3.96e-01 | 72.5% | 60.6% |
| 4521514 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 41.0 | 3.69e-01 | 72.5% | 50.7% |
| 3795092 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.60 | 44.0 | 3.27e-01 | 78.4% | 32.6% |
| 56815 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.59 | 51.0 | 3.65e-01 | 100.0% | 38.1% |
| 3886349 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.57 | 43.0 | 3.12e-01 | 86.3% | 30.9% |
| 3479512 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 46.0 | 4.06e-01 | 100.0% | 57.6% |
| 4566699 | 2004.1.1.422 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase | 0.57 | 40.0 | 2.55e-01 | 76.5% | 15.2% |
| 3456706 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 46.0 | 4.11e-01 | 100.0% | 65.0% |
| 3827611 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.56 | 46.0 | 4.11e-01 | 98.0% | 62.5% |
| 3502282 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.55 | 42.0 | 2.93e-01 | 84.3% | 52.4% |
| 3808802 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.54 | 39.0 | 3.58e-01 | 80.4% | 62.7% |
| 3592885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 42.0 | 4.02e-01 | 86.3% | 80.0% |
| 3474923 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.31e-01 | 80.4% | 51.1% |
| 3479735 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.52 | 41.0 | 3.80e-01 | 100.0% | 82.7% |