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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00110

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00110

Identity

Kingdom:
phage

Quality

64.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-77
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.78 53.0 5.78e-01 94.6% 88.1%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.72 48.0 4.41e-01 97.3% 53.2%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.66 57.0 4.66e-01 95.9% 75.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 46.0 3.65e-01 95.9% 35.9%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.62 38.0 4.41e-01 75.7% 86.8%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 42.0 3.35e-01 91.9% 36.2%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.60 47.0 3.66e-01 97.3% 40.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 35.0 4.15e-01 81.1% 95.5%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.59 47.0 3.65e-01 86.5% 40.4%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.11e-01 95.9% 70.7%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.59 51.0 4.13e-01 93.2% 68.2%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 40.0 3.76e-01 87.8% 58.4%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.99e-01 82.4% 73.1%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 3.37e-01 98.6% 62.7%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.57 41.0 3.48e-01 75.7% 70.1%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.38e-01 90.5% 52.2%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.82e-01 93.2% 60.6%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 48.0 3.27e-01 98.6% 60.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.87e-01 87.8% 75.4%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 48.0 3.09e-01 100.0% 31.9%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 45.0 3.73e-01 90.5% 64.9%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 3.84e-01 89.2% 76.5%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.65e-01 81.1% 74.0%
3b5hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.72e-01 75.7% 67.1%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 45.0 4.04e-01 91.9% 97.1%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.65e-01 94.6% 59.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.75e-01 79.7% 72.2%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.74e-01 78.4% 76.4%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 47.0 3.14e-01 100.0% 30.1%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.24e-01 100.0% 33.3%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 4.13e-01 85.1% 100.0%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 44.0 2.80e-01 97.3% 22.0%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.52 44.0 3.30e-01 95.9% 73.4%
4emiA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 35.0 3.35e-01 94.6% 58.2%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.67e-01 83.8% 81.4%
3go2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 43.0 3.71e-01 91.9% 87.7%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.48e-01 78.4% 74.7%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.07e-01 100.0% 70.3%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 42.0 3.16e-01 94.6% 92.9%
5l2pA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.86e-01 95.9% 86.3%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 45.0 2.85e-01 100.0% 34.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 49.0 4.40e-01 94.6% 53.0%
3496817 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.68 54.0 4.09e-01 94.6% 38.7%
5047469 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 50.0 4.16e-01 93.2% 46.9%
4634766 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.65 34.0 2.64e-01 82.4% 22.5%
4951664 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 53.0 4.20e-01 95.9% 50.7%
3256678 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 48.0 3.84e-01 91.9% 40.6%
4234296 4252.1.1.7 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.60 46.0 3.77e-01 93.2% 44.3%
3933565 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.60 54.0 3.39e-01 100.0% 22.6%
4011378 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.59 53.0 3.95e-01 97.3% 47.4%
4588551 63.1.1.5 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 0.59 52.0 4.01e-01 95.9% 48.4%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 4.28e-01 89.2% 70.6%
4025754 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.70e-01 79.7% 61.7%
3271910 4958.1.1.0 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.58 44.0 3.28e-01 79.7% 86.3%
3526577 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.58 45.0 3.69e-01 82.4% 58.5%
2938507 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.58 47.0 4.08e-01 95.9% 57.8%
3466783 319.1.1.13 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF26144 0.57 43.0 3.46e-01 79.7% 45.7%
3992824 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.57 46.0 4.33e-01 86.5% 77.8%
3205039 63.1.1.5 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 0.57 50.0 3.91e-01 97.3% 45.0%
3963158 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.57 50.0 4.01e-01 97.3% 53.8%
4000095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.30e-01 86.5% 78.9%
5007705 11.1.1.257 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Top6b_C 0.57 41.0 3.62e-01 75.7% 71.4%
3291785 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 41.0 3.62e-01 75.7% 79.0%
3996069 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.57 42.0 3.73e-01 78.4% 64.8%
3183957 63.1.1.5 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 0.57 50.0 3.75e-01 97.3% 44.4%
5045939 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.79e-01 75.7% 77.8%
3938628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.72e-01 78.4% 65.0%
3573203 11.1.1.463 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_C17orf99 0.56 41.0 3.39e-01 78.4% 49.2%
3998997 389.1.2.9 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.55 45.0 4.19e-01 86.5% 80.0%
5041381 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 49.0 4.00e-01 100.0% 59.3%
4001819 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.55 44.0 4.08e-01 86.5% 75.8%
3228120 11.1.1.408 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF281 0.55 45.0 4.06e-01 90.5% 76.7%
3817396 11.1.1.668 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_M 0.54 44.0 3.64e-01 90.5% 79.3%
4988044 11.1.1.410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BatD 0.54 44.0 3.80e-01 90.5% 70.8%
3251289 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.53e-01 75.7% 68.0%
4927170 11.1.1.531 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF11 0.54 40.0 3.40e-01 79.7% 68.8%
5053021 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.53 43.0 4.07e-01 91.9% 92.2%
3413213 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.53 40.0 3.49e-01 90.5% 50.0%
4938174 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 39.0 3.39e-01 81.1% 76.7%
3592495 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 42.0 3.69e-01 89.2% 72.2%
3099010 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 39.0 3.30e-01 78.4% 74.8%
5063415 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 41.0 3.51e-01 87.8% 80.8%
5044862 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.97e-01 100.0% 97.5%
3992801 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.52 42.0 3.96e-01 89.2% 82.2%
3187950 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.57e-01 90.5% 84.0%
5058648 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 40.0 3.70e-01 83.8% 76.8%
3218043 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.63e-01 90.5% 80.0%
4249162 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 45.0 3.42e-01 93.2% 48.8%
4221191 11.1.5.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.51 38.0 3.48e-01 78.4% 87.4%
3602537 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 45.0 3.40e-01 95.9% 51.2%
4276335 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.51 36.0 3.36e-01 94.6% 58.9%
3874075 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 38.0 3.52e-01 79.7% 67.7%
5025222 231.1.2.3 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ 0.50 45.0 3.31e-01 100.0% 59.5%
3255694 11.1.1.793 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.50 37.0 3.29e-01 79.7% 59.1%