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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00113

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

92.5 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-111
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 34.0 4.18e-01 93.4% 67.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 30.0 4.22e-01 93.4% 80.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 32.0 4.16e-01 93.4% 79.7%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 31.0 4.15e-01 92.5% 86.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 28.0 3.88e-01 91.5% 80.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 35.0 4.18e-01 95.3% 82.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 30.0 4.04e-01 89.6% 90.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 30.0 4.04e-01 93.4% 88.7%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 56.0 5.34e-01 100.0% 96.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 29.0 3.91e-01 90.6% 91.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 28.0 3.31e-01 92.5% 59.2%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 27.0 3.70e-01 91.5% 82.0%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 3.88e-01 83.0% 68.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 32.0 4.05e-01 93.4% 88.1%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 33.0 3.77e-01 89.6% 71.1%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 32.0 3.84e-01 92.5% 77.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 33.0 3.66e-01 94.3% 67.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 32.0 3.67e-01 95.3% 69.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 31.0 3.80e-01 93.4% 86.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 31.0 3.79e-01 93.4% 84.4%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 30.0 3.84e-01 92.5% 92.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 4.11e-01 75.5% 100.0%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 35.0 4.01e-01 100.0% 90.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 30.0 3.72e-01 93.4% 91.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.27e-01 70.8% 59.4%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.56 32.0 3.43e-01 87.7% 65.2%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.96e-01 100.0% 96.9%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 29.0 3.67e-01 92.5% 93.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.67e-01 93.4% 88.5%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.85e-01 87.7% 80.0%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 33.0 3.69e-01 100.0% 79.7%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 30.0 3.54e-01 97.2% 79.2%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.87e-01 94.3% 80.5%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 32.0 3.60e-01 98.1% 82.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 33.0 4.09e-01 94.3% 73.8%
4358761 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.68 35.0 4.38e-01 95.3% 81.5%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 36.0 4.39e-01 98.1% 80.0%
3586203 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 31.0 3.85e-01 96.2% 73.8%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 31.0 4.03e-01 71.7% 81.7%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 37.0 4.06e-01 98.1% 74.1%
4567567 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.60 35.0 3.49e-01 84.0% 55.6%
5003400 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 34.0 3.50e-01 84.9% 56.2%
4952888 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 32.0 4.15e-01 96.2% 98.2%
4935682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 31.0 3.98e-01 94.3% 92.7%
4153967 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 42.0 4.14e-01 73.6% 91.2%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.59 28.0 2.42e-01 79.2% 27.9%
4161636 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 35.0 4.20e-01 100.0% 96.9%
4628905 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.58 35.0 4.19e-01 100.0% 96.9%
4992873 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 31.0 3.87e-01 97.2% 93.1%
4167626 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 34.0 4.07e-01 100.0% 95.4%
3791430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 30.0 3.74e-01 93.4% 92.7%
4950506 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 31.0 3.16e-01 100.0% 53.3%
3898672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 30.0 3.55e-01 95.3% 83.1%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 29.0 3.55e-01 88.7% 84.4%
5043569 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 38.0 3.80e-01 74.5% 90.7%
3953025 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 32.0 3.55e-01 100.0% 80.0%
4000532 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.51 36.0 3.89e-01 99.1% 91.8%
4934734 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.50 45.0 4.17e-01 100.0% 94.8%