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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00118
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00118
Identity
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-100
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00096__D3-105
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vseA05 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 55.0 | 4.79e-01 | 98.9% | 86.6% |
| 4govA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 50.0 | 4.47e-01 | 94.6% | 80.2% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.54 | 33.0 | 3.95e-01 | 91.4% | 100.0% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 3.88e-01 | 90.3% | 76.2% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 39.0 | 3.58e-01 | 82.8% | 87.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216450 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.61 | 42.0 | 3.59e-01 | 96.8% | 44.0% |
| 3660244 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.54 | 32.0 | 3.45e-01 | 90.3% | 69.3% |
| 3908192 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.53 | 37.0 | 3.65e-01 | 73.1% | 75.0% |
| 3241890 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 33.0 | 3.31e-01 | 96.8% | 59.0% |
| 3110784 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.52 | 37.0 | 3.43e-01 | 92.5% | 58.3% |
| 3452325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 45.0 | 3.47e-01 | 100.0% | 44.3% |
| 3519125 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 28.0 | 3.43e-01 | 93.5% | 96.0% |
D2
high
residues 102-186