←Back to structures

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00124

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00124

Identity

Kingdom:
phage

Quality

61.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-50
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q2gB02 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.65 50.0 4.37e-01 91.3% 67.1%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.63 47.0 3.92e-01 100.0% 44.3%
3dohA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 45.0 2.97e-01 91.3% 49.2%
1c4pC00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 44.0 3.45e-01 100.0% 89.4%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.56 45.0 4.07e-01 93.5% 66.1%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.69e-01 100.0% 34.0%
3bvxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 36.0 2.65e-01 73.9% 67.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.32e-01 91.3% 52.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3784601 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.87 69.0 7.04e-01 91.3% 88.9%
5034626 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 65.0 6.89e-01 87.0% 95.0%
5040368 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 60.0 6.53e-01 87.0% 100.0%
3608321 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 71.0 7.17e-01 95.7% 95.6%
5059205 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 65.0 6.91e-01 91.3% 100.0%
4932366 375.1.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.81 60.0 6.27e-01 87.0% 92.5%
4026244 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.79 68.0 4.83e-01 97.8% 45.2%
3718059 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 65.0 5.67e-01 97.8% 62.9%
3358914 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.73 62.0 5.49e-01 100.0% 68.6%
4965882 375.1.1.344 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7836 0.65 48.0 4.69e-01 89.1% 74.1%
5069567 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.64 39.0 3.42e-01 71.7% 40.0%
3170351 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 46.0 4.55e-01 91.3% 80.0%
3668886 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 43.0 3.20e-01 93.5% 50.8%
4273113 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.52 40.0 2.93e-01 100.0% 67.1%