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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00125
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-87
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.75 | 53.0 | 4.14e-01 | 75.0% | 69.5% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.74 | 50.0 | 3.94e-01 | 70.0% | 69.9% |
| 5an3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 49.0 | 4.23e-01 | 86.3% | 86.0% |
| 1iygA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 49.0 | 4.26e-01 | 96.2% | 84.2% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 44.0 | 3.58e-01 | 81.2% | 88.9% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 39.0 | 3.44e-01 | 100.0% | 48.7% |
| 4akvA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 43.0 | 3.18e-01 | 80.0% | 86.3% |
| 3qqaA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 3.83e-01 | 92.5% | 83.0% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 44.0 | 2.85e-01 | 90.0% | 80.3% |
| 1jm6B02 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.54 | 48.0 | 3.84e-01 | 100.0% | 88.5% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 46.0 | 3.42e-01 | 98.8% | 39.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3347270 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.68 | 46.0 | 4.22e-01 | 71.2% | 67.6% |
| None | — | 0.64 | 48.0 | 3.29e-01 | 81.2% | 61.3% | |
| 3423943 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.57 | 35.0 | 3.56e-01 | 95.0% | 61.3% |
| 3378749 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.57 | 41.0 | 3.78e-01 | 76.2% | 63.8% |
| 3493622 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 46.0 | 3.17e-01 | 93.8% | 82.5% |
| 4953696 | 3843.1.1.37 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2109 | 0.56 | 39.0 | 3.92e-01 | 98.8% | 71.2% |
| 3950339 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.55 | 42.0 | 3.21e-01 | 81.2% | 56.4% |
| 1779563 | 109.51.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains › T6SS_VasJ | 0.54 | 40.0 | 3.57e-01 | 85.0% | 93.9% |