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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00141
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00141
Identity
- Kingdom:
- phage
Quality
61.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-96
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j0wA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.75 | 58.0 | 4.90e-01 | 88.5% | 100.0% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 60.0 | 5.82e-01 | 88.5% | 82.5% |
| 1l7vA00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.71 | 62.0 | 3.81e-01 | 100.0% | 24.5% |
| 7cyuA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.70 | 47.0 | 4.65e-01 | 75.0% | 64.9% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.68 | 51.0 | 4.06e-01 | 82.7% | 64.5% |
| 2qbyB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 55.0 | 4.58e-01 | 98.1% | 57.8% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.65 | 49.0 | 4.43e-01 | 80.8% | 59.4% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.65 | 59.0 | 5.06e-01 | 100.0% | 100.0% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 57.0 | 4.63e-01 | 96.2% | 68.8% |
| 1w36F02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 52.0 | 4.24e-01 | 90.4% | 51.0% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.64 | 56.0 | 5.16e-01 | 96.2% | 100.0% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.63 | 47.0 | 2.89e-01 | 86.5% | 23.6% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.63 | 48.0 | 4.15e-01 | 84.6% | 53.6% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 54.0 | 3.58e-01 | 100.0% | 33.3% |
| 3qkaE02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 40.0 | 4.22e-01 | 78.8% | 83.7% |
| 1r9lA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 46.0 | 3.25e-01 | 84.6% | 85.1% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 41.0 | 2.71e-01 | 80.8% | 20.5% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.57 | 40.0 | 3.56e-01 | 76.9% | 50.6% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 44.0 | 3.84e-01 | 90.4% | 63.6% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 47.0 | 4.24e-01 | 92.3% | 76.1% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.51 | 40.0 | 2.60e-01 | 94.2% | 25.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962283 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.86 | 61.0 | 5.23e-01 | 78.8% | 48.8% |
| 5025613 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.73 | 56.0 | 3.51e-01 | 86.5% | 16.5% |
| 3450312 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.70 | 58.0 | 3.97e-01 | 92.3% | 50.0% |
| 3261605 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.70 | 51.0 | 4.45e-01 | 78.8% | 52.5% |
| 4878877 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.69 | 56.0 | 3.58e-01 | 94.2% | 18.1% |
| 3412881 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.68 | 58.0 | 5.06e-01 | 96.2% | 98.8% |
| 4093386 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.68 | 52.0 | 4.77e-01 | 86.5% | 62.9% |
| 3481293 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.67 | 51.0 | 4.51e-01 | 88.5% | 56.2% |
| 3832740 | 3567.1.1.16 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › DUF4110 | 0.64 | 48.0 | 4.23e-01 | 88.5% | 51.1% |
| 4517001 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.64 | 49.0 | 5.06e-01 | 82.7% | 96.0% |
| 3478006 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.64 | 48.0 | 4.40e-01 | 88.5% | 60.0% |
| 3919392 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.63 | 39.0 | 2.92e-01 | 76.9% | 27.5% |
| 3638943 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 53.0 | 3.08e-01 | 96.2% | 65.6% |
| 3538104 | 7061.1.1.1 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 | 0.63 | 44.0 | 3.96e-01 | 75.0% | 52.0% |
| 3998578 | 142.1.1.41 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › RabGAP-TBC | 0.61 | 44.0 | 4.23e-01 | 80.8% | 64.6% |
| 4123695 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 51.0 | 4.75e-01 | 100.0% | 87.1% |
| 3607124 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.58 | 43.0 | 3.71e-01 | 84.6% | 67.4% |
| 3662464 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.53 | 40.0 | 3.02e-01 | 92.3% | 77.1% |