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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00185
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00185
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-126
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 38.0 | 4.18e-01 | 90.5% | 79.8% |
| 4x5mA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.56 | 32.0 | 3.55e-01 | 75.2% | 68.6% |
| 1aorA03 | 1.10.599.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 | 0.56 | 40.0 | 3.29e-01 | 75.2% | 54.1% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.54 | 36.0 | 3.32e-01 | 85.7% | 52.6% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.53 | 32.0 | 3.03e-01 | 70.5% | 49.6% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 37.0 | 3.58e-01 | 87.6% | 65.0% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.51 | 38.0 | 3.59e-01 | 80.0% | 84.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267310 | 5049.1.2.1 ↗ | alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT | 0.59 | 46.0 | 3.35e-01 | 100.0% | 30.7% |
| 3590799 | 191.1.1.12 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 | 0.57 | 40.0 | 3.78e-01 | 91.4% | 60.0% |
| 3257424 | 611.2.1.0 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) | 0.57 | 44.0 | 4.59e-01 | 85.7% | 88.4% |
| 3813679 | 130.1.1.60 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › zf-RVT | 0.56 | 50.0 | 4.42e-01 | 100.0% | 86.5% |
| 3740181 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.56 | 40.0 | 4.34e-01 | 95.2% | 88.9% |
| 3958351 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.54 | 39.0 | 3.50e-01 | 74.3% | 90.3% |
| 4010442 | 5067.1.1.1 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran | 0.53 | 45.0 | 3.59e-01 | 100.0% | 46.0% |
| 3541748 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.52 | 40.0 | 3.74e-01 | 99.0% | 65.4% |
| 3702921 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.52 | 35.0 | 4.00e-01 | 97.1% | 98.7% |
| 4175767 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.51 | 42.0 | 4.22e-01 | 85.7% | 87.6% |
| 4380027 | 1075.1.1.65 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › DUF2705 | 0.51 | 41.0 | 3.19e-01 | 88.6% | 89.6% |
| 4235156 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.51 | 41.0 | 3.91e-01 | 85.7% | 95.8% |