←Back to structures
SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00196
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00196
Identity
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-80
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 61.0 | 6.54e-01 | 80.0% | 98.5% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 62.0 | 5.58e-01 | 85.3% | 68.0% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 51.0 | 5.49e-01 | 73.3% | 81.2% |
| 1wjqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 53.0 | 5.23e-01 | 77.3% | 79.5% |
| 2rhiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 52.0 | 4.54e-01 | 77.3% | 55.4% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 51.0 | 4.15e-01 | 77.3% | 44.0% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 50.0 | 4.18e-01 | 77.3% | 50.4% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 39.0 | 4.25e-01 | 70.7% | 96.7% |
| 2rprA00 | 2.20.25.240 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 38.0 | 3.70e-01 | 70.7% | 75.9% |
| 3oblA00 | 2.40.128.450 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 38.0 | 3.18e-01 | 72.0% | 65.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484700 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.83 | 67.0 | 6.03e-01 | 85.3% | 77.0% |
| 3928711 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 61.0 | 5.87e-01 | 81.3% | 70.6% |
| 3598283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 54.0 | 4.43e-01 | 70.7% | 60.0% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.78 | 67.0 | 6.22e-01 | 93.3% | 83.2% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.77 | 67.0 | 6.20e-01 | 96.0% | 90.5% |
| 3931905 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 52.0 | 4.50e-01 | 70.7% | 67.0% |
| 3752623 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.76 | 55.0 | 4.86e-01 | 76.0% | 60.0% |
| 3328489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 59.0 | 6.11e-01 | 85.3% | 97.1% |
| 3866571 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.73 | 54.0 | 3.29e-01 | 77.3% | 14.4% |
| 3257276 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.72 | 53.0 | 4.38e-01 | 76.0% | 63.2% |
| 3889853 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.71 | 52.0 | 4.45e-01 | 76.0% | 53.0% |
| 3907154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 52.0 | 4.38e-01 | 77.3% | 49.6% |
| 3515145 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.71 | 52.0 | 4.79e-01 | 77.3% | 65.3% |
| 3596265 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 54.0 | 4.84e-01 | 80.0% | 74.0% |
| 3224788 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.70 | 52.0 | 4.68e-01 | 77.3% | 62.0% |
| 3397026 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.70 | 51.0 | 3.51e-01 | 77.3% | 24.8% |
| 3797511 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 51.0 | 4.73e-01 | 77.3% | 66.3% |
| 3576219 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.70 | 51.0 | 4.08e-01 | 77.3% | 42.8% |
| 3797485 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 51.0 | 4.21e-01 | 77.3% | 47.7% |
| 3595283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 4.68e-01 | 84.0% | 58.3% |
| 3706223 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 53.0 | 4.76e-01 | 84.0% | 63.8% |
| 3624525 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.68 | 54.0 | 4.01e-01 | 85.3% | 80.0% |
| 4380562 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 45.0 | 3.27e-01 | 72.0% | 60.0% |
| 3741268 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.61 | 52.0 | 3.95e-01 | 93.3% | 66.3% |
| 3607985 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 49.0 | 4.49e-01 | 94.7% | 72.4% |
| 3981561 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 40.0 | 3.28e-01 | 70.7% | 96.4% |
| 3730329 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.57 | 40.0 | 3.23e-01 | 73.3% | 76.1% |
| 135919 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.57 | 38.0 | 3.70e-01 | 70.7% | 75.9% |
| 3531356 | 5.1.5.192 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WD40_MABP1-WDR62_2nd | 0.55 | 39.0 | 2.51e-01 | 78.7% | 83.4% |
| 5018514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.25e-01 | 76.0% | 84.4% |
| 3241614 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 42.0 | 3.52e-01 | 90.7% | 89.0% |
| None | — | 0.51 | 41.0 | 2.77e-01 | 94.7% | 73.7% | |
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.51 | 42.0 | 2.49e-01 | 100.0% | 24.8% |
| 4965852 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.51 | 36.0 | 3.55e-01 | 74.7% | 86.3% |
| 3412823 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.50 | 35.0 | 3.88e-01 | 76.0% | 100.0% |
| 5059727 | 5.1.9.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component | 0.50 | 36.0 | 2.61e-01 | 76.0% | 34.7% |