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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00211
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00211
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-138
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00294__D11-118
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8kA03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.72 | 46.0 | 4.64e-01 | 70.7% | 63.8% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.71 | 47.0 | 5.19e-01 | 71.6% | 85.6% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 42.0 | 4.41e-01 | 76.7% | 64.8% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.69 | 43.0 | 4.71e-01 | 70.7% | 75.0% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.68 | 49.0 | 4.89e-01 | 74.1% | 78.0% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 41.0 | 4.76e-01 | 100.0% | 90.1% |
| 3ezuA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 44.0 | 4.07e-01 | 74.1% | 53.4% |
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 45.0 | 5.15e-01 | 100.0% | 98.8% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.64 | 37.0 | 4.52e-01 | 70.7% | 92.9% |
| 1tuaA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.64 | 43.0 | 4.86e-01 | 80.2% | 95.2% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.64 | 57.0 | 4.09e-01 | 100.0% | 82.7% |
| 2cdqA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 42.0 | 4.71e-01 | 89.7% | 91.7% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 44.0 | 4.05e-01 | 73.3% | 55.7% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 40.0 | 3.86e-01 | 71.6% | 55.6% |
| 3hbxA03 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.63 | 44.0 | 4.96e-01 | 98.3% | 95.5% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 39.0 | 4.48e-01 | 70.7% | 88.6% |
| 3ig5A02 | 3.30.590.50 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.62 | 54.0 | 3.83e-01 | 95.7% | 94.4% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 41.0 | 4.70e-01 | 80.2% | 95.1% |
| 3fotA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.62 | 46.0 | 3.64e-01 | 78.4% | 75.9% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.61 | 46.0 | 3.99e-01 | 79.3% | 82.3% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.60 | 40.0 | 4.37e-01 | 81.0% | 83.2% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 4.36e-01 | 70.7% | 82.5% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.60 | 42.0 | 3.84e-01 | 73.3% | 62.0% |
| 2nooA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 49.0 | 3.77e-01 | 89.7% | 47.0% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 38.0 | 4.23e-01 | 100.0% | 86.0% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 45.0 | 4.81e-01 | 96.6% | 94.8% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.59 | 35.0 | 4.24e-01 | 77.6% | 92.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 45.0 | 4.80e-01 | 96.6% | 94.9% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 45.0 | 4.51e-01 | 95.7% | 81.8% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.57 | 41.0 | 4.05e-01 | 74.1% | 73.8% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 42.0 | 3.96e-01 | 78.4% | 63.2% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.56 | 49.0 | 3.48e-01 | 96.6% | 68.1% |
| 4x0qA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 4.12e-01 | 86.2% | 67.1% |
| 6ifnA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 39.0 | 3.44e-01 | 70.7% | 54.4% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 35.0 | 4.14e-01 | 81.0% | 93.6% |
| 3mr7A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 37.0 | 3.31e-01 | 70.7% | 45.7% |
| 5llwA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 42.0 | 4.04e-01 | 89.7% | 67.9% |
| 4obuA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 44.0 | 3.57e-01 | 92.2% | 42.7% |
| 1i6uA01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 33.0 | 4.02e-01 | 77.6% | 98.5% |
| 2fm8B00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 45.0 | 4.41e-01 | 87.9% | 93.6% |
| 3n5mB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.71e-01 | 81.0% | 54.0% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.55 | 37.0 | 3.98e-01 | 88.8% | 82.1% |
| 2ctfA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 38.0 | 3.98e-01 | 80.2% | 80.4% |
| 2dgkA02 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 42.0 | 4.35e-01 | 93.1% | 87.9% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.54 | 39.0 | 4.05e-01 | 87.1% | 79.6% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 44.0 | 4.30e-01 | 90.5% | 80.5% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 44.0 | 4.29e-01 | 87.9% | 84.9% |
| 3tu3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 42.0 | 4.23e-01 | 86.2% | 81.5% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.54 | 43.0 | 4.19e-01 | 94.8% | 76.9% |
| 2jisA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 44.0 | 3.46e-01 | 87.9% | 44.4% |
| 4js8A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 36.0 | 3.98e-01 | 72.4% | 91.0% |
| 3n89A02 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.51 | 45.0 | 4.29e-01 | 98.3% | 98.5% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068983 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.72 | 44.0 | 5.09e-01 | 71.6% | 83.5% |
| 4311880 | 304.11.1.4 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › FAS_AT_central | 0.71 | 42.0 | 4.41e-01 | 75.0% | 63.8% |
| 4796691 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.71 | 43.0 | 4.45e-01 | 76.7% | 63.6% |
| 5010022 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.71 | 48.0 | 5.51e-01 | 73.3% | 95.3% |
| 3698765 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.70 | 46.0 | 4.83e-01 | 70.7% | 73.3% |
| 3599904 | 304.19.1.0 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain | 0.70 | 46.0 | 4.96e-01 | 70.7% | 78.0% |
| 4985071 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.70 | 45.0 | 4.83e-01 | 71.6% | 75.8% |
| 5043879 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.69 | 46.0 | 5.15e-01 | 70.7% | 87.8% |
| 5046352 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.69 | 38.0 | 4.03e-01 | 70.7% | 59.0% |
| 4956754 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.69 | 44.0 | 4.81e-01 | 71.6% | 78.9% |
| 4125198 | 304.11.1.2 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT | 0.69 | 38.0 | 4.44e-01 | 70.7% | 77.5% |
| 3386666 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.68 | 49.0 | 5.48e-01 | 93.1% | 96.7% |
| 1442273 | 304.11.1.4 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › FAS_AT_central | 0.68 | 42.0 | 4.52e-01 | 74.1% | 72.2% |
| 4416593 | 304.28.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st | 0.68 | 45.0 | 4.94e-01 | 79.3% | 85.6% |
| 4943374 | 304.19.1.0 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain | 0.68 | 47.0 | 5.09e-01 | 71.6% | 86.3% |
| 4126668 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.68 | 42.0 | 4.37e-01 | 75.9% | 67.6% |
| 5036199 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 42.0 | 5.07e-01 | 78.4% | 98.7% |
| 3280378 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.66 | 46.0 | 4.09e-01 | 71.6% | 50.3% |
| 3994782 | 321.1.1.5 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS | 0.66 | 59.0 | 3.70e-01 | 100.0% | 80.2% |
| 5054097 | 305.1.1.10 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › PF27806 | 0.66 | 46.0 | 5.17e-01 | 84.5% | 97.6% |
| 5578 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.65 | 45.0 | 5.13e-01 | 100.0% | 97.6% |
| 3449564 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.65 | 50.0 | 4.16e-01 | 80.2% | 81.0% |
| 5052527 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.64 | 47.0 | 4.84e-01 | 90.5% | 80.9% |
| 5029644 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.63 | 44.0 | 4.62e-01 | 74.1% | 80.0% |
| 5036264 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.62 | 44.0 | 4.64e-01 | 74.1% | 81.0% |
| 3195236 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 45.0 | 5.02e-01 | 94.8% | 96.7% |
| 3311237 | 304.52.1.1 ↗ | a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 | 0.62 | 44.0 | 4.86e-01 | 75.9% | 93.3% |
| 3597940 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 42.0 | 4.63e-01 | 81.0% | 90.0% |
| 4024263 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.62 | 51.0 | 4.19e-01 | 89.7% | 50.2% |
| 4031994 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.62 | 38.0 | 4.49e-01 | 79.3% | 98.6% |
| 3832146 | 304.8.1.68 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF493 | 0.62 | 44.0 | 4.78e-01 | 75.9% | 89.5% |
| 4261592 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.61 | 41.0 | 4.68e-01 | 79.3% | 94.1% |
| 3241665 | 327.11.2.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_8 | 0.61 | 41.0 | 4.30e-01 | 81.0% | 77.1% |
| 4053995 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.60 | 41.0 | 4.44e-01 | 81.0% | 85.3% |
| 4939286 | 304.35.1.3 ↗ | a+b two layers › Alpha-beta plaits › Methyl-coenzyme M reductase subunits › Methyl-coenzyme M reductase subunits › MCR_beta_N | 0.60 | 46.0 | 3.97e-01 | 81.0% | 69.4% |
| 3738917 | 304.57.1.2 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › Pop8 | 0.60 | 40.0 | 4.26e-01 | 74.1% | 77.7% |
| 5072410 | 306.6.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › GH3_C | 0.60 | 44.0 | 4.83e-01 | 99.1% | 100.0% |
| 3857666 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.60 | 39.0 | 4.38e-01 | 95.7% | 89.4% |
| 5024608 | 304.136.1.1 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 | 0.59 | 47.0 | 4.98e-01 | 89.7% | 98.0% |
| 4978667 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.59 | 42.0 | 4.45e-01 | 100.0% | 87.0% |
| 4516562 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.58 | 41.0 | 4.38e-01 | 80.2% | 84.0% |
| 3256818 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 42.0 | 4.62e-01 | 98.3% | 93.7% |
| 4961406 | 304.136.1.0 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain | 0.58 | 45.0 | 4.85e-01 | 86.2% | 100.0% |
| 4041570 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.58 | 40.0 | 4.30e-01 | 80.2% | 86.3% |
| 4249312 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.57 | 40.0 | 3.59e-01 | 79.3% | 51.9% |
| 3218802 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.57 | 40.0 | 4.24e-01 | 72.4% | 84.0% |
| 4885955 | 309.1.1.3 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › LuxS | 0.56 | 49.0 | 4.49e-01 | 97.4% | 87.7% |
| 4026758 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 44.0 | 4.32e-01 | 82.8% | 96.8% |
| 3490375 | 309.1.1.8 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M | 0.56 | 46.0 | 3.67e-01 | 89.7% | 49.6% |
| 5045508 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.55 | 50.0 | 4.69e-01 | 100.0% | 90.3% |
| 4287508 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.55 | 44.0 | 4.28e-01 | 87.1% | 82.3% |
| 3677847 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 41.0 | 4.08e-01 | 80.2% | 92.5% |
| 3961696 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.53 | 42.0 | 3.87e-01 | 86.2% | 65.3% |
| 3522185 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.53 | 43.0 | 4.23e-01 | 87.9% | 86.4% |
| 4239502 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.53 | 37.0 | 4.05e-01 | 80.2% | 93.3% |
| 4115819 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.53 | 42.0 | 3.71e-01 | 85.3% | 61.2% |
| 5000991 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.53 | 42.0 | 4.14e-01 | 88.8% | 83.1% |
| 5058917 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 42.0 | 4.14e-01 | 87.9% | 83.2% |
| 4640230 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.52 | 36.0 | 3.82e-01 | 87.9% | 86.3% |
| 5045407 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.52 | 42.0 | 4.13e-01 | 90.5% | 84.6% |
| 4956062 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.51 | 41.0 | 4.06e-01 | 88.8% | 82.2% |
| 5000990 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.51 | 43.0 | 3.96e-01 | 95.7% | 73.5% |
| 5075417 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 35.0 | 3.57e-01 | 71.6% | 75.7% |
| 3021706 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.50 | 44.0 | 4.03e-01 | 95.7% | 90.7% |
| 5082749 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.50 | 43.0 | 3.88e-01 | 94.8% | 91.9% |
D2
high
residues 144-211
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3326225 | 3012.1.1.16 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › D27-like_C | 0.53 | 45.0 | 3.34e-01 | 100.0% | 35.9% |
| 3373540 | 304.55.1.15 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N | 0.51 | 35.0 | 2.40e-01 | 70.6% | 90.8% |
| 3548131 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.51 | 42.0 | 2.68e-01 | 98.5% | 80.2% |
| 3640344 | 217.1.1.1 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 | 0.50 | 34.0 | 2.39e-01 | 72.1% | 93.1% |