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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00228
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00228
Identity
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-85
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_86355_prodigal-single.1__X__X__00268__D30-83
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 54.0 | 5.54e-01 | 77.2% | 83.0% |
| 1pjqA03 | 1.10.8.210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain | 0.68 | 51.0 | 4.95e-01 | 84.2% | 86.2% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.66 | 50.0 | 4.49e-01 | 82.5% | 77.8% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.64 | 47.0 | 4.36e-01 | 82.5% | 80.5% |
| 4kxfB02 | 1.10.1900.50 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › | 0.61 | 49.0 | 4.94e-01 | 93.0% | 93.0% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 43.0 | 4.41e-01 | 100.0% | 79.6% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.60 | 50.0 | 4.27e-01 | 100.0% | 64.4% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 40.0 | 3.95e-01 | 86.0% | 64.6% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.57 | 45.0 | 3.83e-01 | 86.0% | 55.3% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.54 | 38.0 | 3.37e-01 | 73.7% | 53.8% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.54 | 46.0 | 4.01e-01 | 98.2% | 78.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4453525 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.77 | 64.0 | 6.15e-01 | 91.2% | 83.1% |
| 5062328 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.72 | 61.0 | 3.90e-01 | 96.5% | 19.4% |
| 4953551 | 4049.1.1.0 ↗ | alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like | 0.70 | 50.0 | 4.84e-01 | 77.2% | 84.6% |
| 1487333 | 3323.1.1.2 ↗ | alpha bundles › Inserted helical domain in fatty acid synthase subunit beta › Inserted helical domain in fatty acid synthase subunit beta › Inserted helical domain in fatty acid synthase subunit beta › FabD_helical_ins | 0.68 | 50.0 | 4.17e-01 | 80.7% | 46.4% |
| 2883966 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.67 | 56.0 | 5.44e-01 | 100.0% | 90.9% |
| 3977168 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 52.0 | 4.80e-01 | 87.7% | 70.7% |
| 3298515 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.66 | 53.0 | 4.34e-01 | 94.7% | 62.6% |
| 3166208 | 3121.1.1.4 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_TamA_1 | 0.63 | 49.0 | 4.48e-01 | 91.2% | 63.7% |
| 3484141 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 46.0 | 4.46e-01 | 94.7% | 73.8% |
| 4022320 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 45.0 | 4.70e-01 | 94.7% | 100.0% |
| 4946915 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 47.0 | 4.00e-01 | 100.0% | 71.4% |
| 4938672 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 42.0 | 3.93e-01 | 82.5% | 90.0% |
| 4980730 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 44.0 | 3.92e-01 | 89.5% | 81.2% |
| 2581429 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.50 | 42.0 | 4.22e-01 | 93.0% | 93.2% |