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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00237

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00237

Identity

Kingdom:
phage

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
D2 high residues 103-144
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.85 58.0 6.24e-01 71.4% 88.2%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 58.0 5.06e-01 76.2% 53.2%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.79 59.0 4.91e-01 81.0% 47.2%
7v8fB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 66.0 5.06e-01 92.9% 54.3%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.78 54.0 4.87e-01 73.8% 53.4%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.77 57.0 4.83e-01 81.0% 48.6%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 62.0 4.93e-01 92.9% 57.0%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.75 53.0 4.69e-01 76.2% 54.0%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.75 60.0 4.67e-01 92.9% 54.3%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.73 63.0 4.36e-01 100.0% 47.9%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.72 58.0 4.67e-01 90.5% 61.0%
4kfzA02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 53.0 4.66e-01 83.3% 55.4%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.71 55.0 5.49e-01 83.3% 83.7%
3vd6C01 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.69 55.0 5.62e-01 100.0% 95.1%
1v6gA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.69 57.0 4.58e-01 92.9% 59.3%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.65 53.0 4.31e-01 92.9% 60.0%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.64 50.0 3.98e-01 92.9% 53.1%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.64 52.0 4.50e-01 97.6% 69.4%
1a7iA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.61 47.0 4.32e-01 90.5% 81.7%
2ysmA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 46.0 3.48e-01 90.5% 41.4%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 47.0 4.39e-01 100.0% 83.3%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 44.0 4.29e-01 95.2% 78.4%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 44.0 4.06e-01 90.5% 80.7%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958983 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.94 70.0 6.82e-01 78.6% 73.3%
5021070 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.91 65.0 7.05e-01 76.2% 91.4%
4940794 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.90 70.0 6.58e-01 83.3% 70.0%
5046967 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.90 64.0 6.61e-01 76.2% 80.0%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.89 68.0 6.43e-01 83.3% 70.0%
4082146 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.88 65.0 6.36e-01 78.6% 77.8%
3607247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.87 64.0 6.89e-01 78.6% 97.1%
5021067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.87 59.0 4.33e-01 71.4% 28.6%
4998890 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.86 59.0 5.78e-01 71.4% 66.7%
3922147 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.86 58.0 6.57e-01 71.4% 100.0%
4054302 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.86 61.0 6.04e-01 76.2% 71.1%
3547416 376.1.3.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.86 58.0 5.31e-01 71.4% 54.5%
4941565 377.1.1.135 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7685 0.86 66.0 6.75e-01 83.3% 87.5%
3716795 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.86 63.0 6.73e-01 78.6% 100.0%
3724843 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 66.0 6.46e-01 83.3% 77.8%
3435304 376.1.1.52 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.85 65.0 5.61e-01 83.3% 53.8%
8199 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 58.0 6.29e-01 71.4% 90.9%
4939301 931.1.1.0 ↗ few secondary structure elements › Metallothionein › Metallothionein › Metallothionein 0.84 57.0 6.50e-01 71.4% 100.0%
4940040 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 62.0 6.04e-01 81.0% 73.3%
3398343 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 61.0 6.57e-01 78.6% 97.1%
4957868 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 56.0 6.02e-01 76.2% 85.7%
3561934 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.83 59.0 6.29e-01 76.2% 94.3%
3506999 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 56.0 6.31e-01 71.4% 100.0%
5016275 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.82 57.0 6.13e-01 73.8% 88.6%
3927094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 70.0 5.88e-01 100.0% 57.1%
5045480 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 58.0 6.19e-01 76.2% 91.4%
3735240 376.1.1.114 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.81 69.0 6.15e-01 95.2% 90.0%
3717537 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 61.0 5.56e-01 81.0% 61.8%
3915924 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 58.0 6.22e-01 76.2% 94.3%
4172765 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 55.0 6.22e-01 71.4% 100.0%
3352595 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.80 54.0 5.82e-01 71.4% 100.0%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.80 66.0 5.22e-01 92.9% 57.6%
3304089 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.80 58.0 5.78e-01 81.0% 75.6%
3252156 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 62.0 6.37e-01 88.1% 95.0%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 66.0 5.13e-01 92.9% 53.3%
3617313 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 56.0 5.96e-01 78.6% 97.1%
3336883 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.79 65.0 6.44e-01 92.9% 91.1%
3268530 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 58.0 5.95e-01 83.3% 87.5%
3399653 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 57.0 6.13e-01 78.6% 97.1%
3511728 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.78 60.0 5.93e-01 85.7% 82.2%
3472940 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 53.0 5.89e-01 73.8% 100.0%
5008357 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 53.0 5.73e-01 71.4% 85.7%
3529053 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.78 58.0 6.21e-01 81.0% 100.0%
4442858 931.1.1.15 ↗ few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 0.78 53.0 5.64e-01 73.8% 88.6%
3256364 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 57.0 4.92e-01 85.7% 50.0%
3498229 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 58.0 3.77e-01 83.3% 19.1%
3697192 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 55.0 4.83e-01 78.6% 50.8%
5019399 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 62.0 5.70e-01 90.5% 98.2%
1624933 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 54.0 5.95e-01 73.8% 100.0%
3264824 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 52.0 5.74e-01 71.4% 100.0%
3405923 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.76 52.0 5.78e-01 73.8% 100.0%
3800813 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 55.0 5.85e-01 78.6% 94.3%
4000791 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.76 56.0 5.70e-01 83.3% 85.0%
3574433 604.1.1.125 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SYNRG_C 0.76 60.0 4.15e-01 92.9% 26.7%
3565551 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.75 50.0 5.28e-01 71.4% 96.7%
5067072 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 57.0 5.39e-01 92.9% 70.0%
3495690 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 64.0 5.78e-01 100.0% 93.3%
5027908 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 55.0 5.45e-01 100.0% 75.6%
3472238 376.1.5.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger › zf-AN1 0.74 59.0 6.01e-01 92.9% 92.5%
3519190 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.74 55.0 5.41e-01 81.0% 75.6%
3898776 376.1.1.92 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › IRF-2BP1_2 0.74 62.0 5.97e-01 97.6% 93.9%
5001950 266.1.1.1 ↗ a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.74 51.0 3.15e-01 73.8% 12.4%
4187705 377.1.3.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.73 60.0 5.71e-01 90.5% 85.7%
3529042 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.73 53.0 5.11e-01 81.0% 68.0%
3642067 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 54.0 4.97e-01 81.0% 63.6%
3313615 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 53.0 5.62e-01 81.0% 100.0%
3238776 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 48.0 5.16e-01 73.8% 96.7%
3879357 377.1.1.30 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › IRF-2BP1_2 0.72 60.0 5.98e-01 97.6% 93.3%
3498119 376.1.3.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › LIM 0.72 60.0 5.17e-01 92.9% 86.2%
3833476 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.72 56.0 5.06e-01 88.1% 85.0%
2393006 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 50.0 5.43e-01 83.3% 100.0%
8148 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.71 49.0 5.23e-01 73.8% 100.0%
3504555 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 60.0 4.90e-01 97.6% 55.0%
3175755 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 50.0 4.48e-01 76.2% 58.3%
219752 377.1.1.25 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LID 0.71 52.0 4.23e-01 85.7% 40.7%
3598301 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 57.0 4.54e-01 95.2% 61.1%
3914982 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.69 55.0 4.98e-01 92.9% 85.0%
3470972 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.69 56.0 5.12e-01 97.6% 81.7%
3395505 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 53.0 5.24e-01 95.2% 93.3%
3407901 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.67 55.0 5.11e-01 95.2% 90.9%
3301457 931.1.1.7 ↗ few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › VATC 0.66 49.0 5.15e-01 92.9% 100.0%
3736484 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 53.0 4.11e-01 95.2% 43.2%
3671431 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.63 54.0 5.34e-01 100.0% 93.3%
3264583 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 47.0 4.95e-01 90.5% 100.0%
3541609 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.59 44.0 4.44e-01 88.1% 95.0%