←Back to structures
SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00269
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00269
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-154
Domain cluster:
rep: MN695334.1__QGT54496.1__b3_0254__00238__D2-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08302.17 best | tRNA_lig_CPD | 26.8 | 4.90e-06 | 62.7% | 22.4% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.79 | 75.0 | 6.62e-01 | 100.0% | 97.6% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.55 | 50.0 | 4.57e-01 | 100.0% | 85.4% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.53 | 47.0 | 4.58e-01 | 100.0% | 88.6% |
| 1nh2C00 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.52 | 19.0 | 2.98e-01 | 74.5% | 90.0% |
| 3ai4A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 45.0 | 3.88e-01 | 97.4% | 75.8% |
| 1nvpD02 | 2.30.18.10 | Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain | 0.51 | 19.0 | 3.07e-01 | 76.5% | 100.0% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 4.25e-01 | 90.8% | 85.8% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.50 | 42.0 | 4.15e-01 | 90.8% | 86.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709497 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.83 | 72.0 | 7.42e-01 | 100.0% | 94.5% |
| 3203190 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 68.0 | 7.02e-01 | 100.0% | 93.8% |
| 3781535 | 264.1.1.10 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD | 0.77 | 73.0 | 6.77e-01 | 100.0% | 99.5% |
| 3594510 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.77 | 73.0 | 6.43e-01 | 100.0% | 98.1% |
| 3056890 | 54.1.1.3 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › VP40 | 0.53 | 38.0 | 3.90e-01 | 100.0% | 75.2% |