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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00314

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00314

Identity

Kingdom:
phage

Quality

60.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-151
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 38.0 4.77e-01 87.5% 91.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 5.01e-01 100.0% 88.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 38.0 3.55e-01 88.5% 47.9%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 37.0 4.37e-01 88.5% 86.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 36.0 3.88e-01 96.9% 69.5%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 32.0 3.39e-01 86.5% 56.3%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 4.08e-01 88.5% 83.3%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 31.0 3.27e-01 94.8% 61.8%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.52 44.0 3.90e-01 91.7% 89.2%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 2.98e-01 87.5% 97.2%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.33e-01 74.0% 86.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.59e-01 87.5% 95.2%
3905176 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 38.0 4.41e-01 92.7% 89.2%
4225360 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 47.0 4.36e-01 83.3% 80.8%
4114121 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.61 40.0 4.28e-01 93.8% 80.0%
4655719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 39.0 4.05e-01 88.5% 70.0%
3992026 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 31.0 3.63e-01 86.5% 76.9%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 43.0 4.44e-01 100.0% 88.9%
3402874 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 31.0 3.61e-01 89.6% 80.0%
3907123 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.54 44.0 3.54e-01 89.6% 45.9%
4007401 4.1.1.393 ↗ beta barrels › SH3 › SH3 › SH3 › PF29414 0.53 45.0 4.37e-01 93.8% 100.0%
3409941 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 31.0 3.53e-01 92.7% 80.0%
3187920 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 4.03e-01 96.9% 70.7%
3395415 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 31.0 3.53e-01 89.6% 80.0%
3278698 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.27e-01 94.8% 92.4%
3576800 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.51 34.0 3.49e-01 92.7% 69.5%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.50 34.0 3.38e-01 92.7% 64.4%
5072111 325.1.6.9 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 0.50 41.0 3.48e-01 87.5% 56.8%