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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00316

Bact-Vir

SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00316

Identity

Kingdom:
phage

Quality

80.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-121
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.68 51.0 4.12e-01 78.7% 92.9%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.67 46.0 4.12e-01 70.2% 77.5%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 50.0 3.97e-01 78.7% 92.7%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 51.0 4.04e-01 81.9% 95.0%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 48.0 3.86e-01 77.7% 92.7%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.64 46.0 4.08e-01 74.5% 75.6%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 50.0 3.98e-01 81.9% 93.9%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 48.0 3.91e-01 79.8% 94.2%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 48.0 3.87e-01 81.9% 94.9%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 45.0 3.91e-01 76.6% 85.7%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 48.0 3.85e-01 83.0% 94.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 45.0 3.72e-01 77.7% 93.9%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 3.88e-01 76.6% 83.8%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 4.12e-01 76.6% 92.2%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.60 42.0 3.08e-01 73.4% 41.9%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.77e-01 76.6% 51.7%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 3.80e-01 76.6% 78.2%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 44.0 3.84e-01 76.6% 76.6%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 3.68e-01 72.3% 77.8%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 43.0 3.82e-01 76.6% 82.1%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.85e-01 76.6% 89.5%
2yyoA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.58 44.0 3.64e-01 79.8% 72.5%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.48e-01 100.0% 68.9%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 49.0 3.32e-01 95.7% 65.9%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.40e-01 96.8% 82.4%
3kuvB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 38.0 3.38e-01 70.2% 87.2%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.34e-01 93.6% 74.6%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 49.0 3.26e-01 96.8% 80.7%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 45.0 4.07e-01 90.4% 91.1%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.48e-01 84.0% 68.9%
2essA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.37e-01 76.6% 92.3%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.61e-01 94.7% 62.9%
2oiwA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.42e-01 78.7% 94.0%
2cyeC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.47e-01 80.9% 97.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801721 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.70 45.0 4.53e-01 77.7% 64.2%
3553889 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.70 51.0 3.96e-01 76.6% 86.2%
5014272 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 45.0 5.20e-01 74.5% 91.4%
3842370 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.67 52.0 4.13e-01 79.8% 93.1%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.67 49.0 3.97e-01 76.6% 93.1%
4008896 11.1.1.1286 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.66 53.0 4.84e-01 86.2% 98.4%
3934097 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.66 45.0 3.90e-01 74.5% 46.4%
3781393 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 46.0 4.87e-01 72.3% 82.1%
142797 233.1.1.6 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.64 48.0 3.83e-01 77.7% 93.3%
3279689 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.64 47.0 3.52e-01 76.6% 48.2%
3339690 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.63 45.0 3.95e-01 89.4% 51.1%
3574387 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 52.0 3.58e-01 89.4% 55.8%
4879078 233.1.1.6 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.62 47.0 3.72e-01 77.7% 92.7%
3847239 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.62 49.0 3.88e-01 83.0% 96.2%
3508100 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.62 48.0 4.19e-01 81.9% 64.3%
4471350 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.62 44.0 3.82e-01 84.0% 48.3%
3268424 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.61 45.0 3.78e-01 76.6% 71.6%
3828471 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.61 43.0 3.86e-01 89.4% 51.5%
3827484 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 51.0 3.69e-01 88.3% 47.8%
4978436 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.61 45.0 3.84e-01 76.6% 82.1%
3290321 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 43.0 4.27e-01 75.5% 69.0%
4318843 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.61 41.0 3.57e-01 70.2% 46.2%
3881500 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.60 47.0 3.80e-01 83.0% 94.4%
3675483 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.49e-01 96.8% 62.7%
3261416 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.60 48.0 4.22e-01 86.2% 86.4%
388139 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 44.0 3.80e-01 76.6% 74.5%
1250391 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.60 44.0 3.80e-01 76.6% 78.7%
3444338 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.60 50.0 3.51e-01 88.3% 45.3%
3223862 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 48.0 3.67e-01 85.1% 79.0%
3934135 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 43.0 3.82e-01 74.5% 63.1%
3346599 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.59 43.0 4.33e-01 75.5% 93.5%
3740970 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.59 51.0 3.48e-01 95.7% 69.1%
4653627 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.59 45.0 3.73e-01 80.9% 54.5%
3743378 4252.1.1.5 beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.59 41.0 3.40e-01 87.2% 41.2%
3927637 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 47.0 3.61e-01 85.1% 81.0%
3998279 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 39.0 3.77e-01 71.3% 60.0%
5050464 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 43.0 3.41e-01 78.7% 99.5%
3956583 4252.1.1.7 beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.58 43.0 3.56e-01 79.8% 75.9%
5058974 222.1.1.5 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.57 45.0 3.80e-01 83.0% 93.3%
3918435 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 44.0 3.15e-01 83.0% 50.7%
3176331 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 3.41e-01 75.5% 62.4%
3169953 2484.5.1.0 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.57 41.0 3.42e-01 75.5% 61.8%
4345013 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.56 43.0 3.69e-01 83.0% 87.5%
3711018 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 3.08e-01 89.4% 87.1%
3426652 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 47.0 3.31e-01 93.6% 50.3%
3616043 216.1.1.19 a+b two layers › UBC-like › UBC-like › UBC-like › Med14_RM6 0.56 42.0 3.62e-01 79.8% 62.0%
144144 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.56 49.0 3.24e-01 96.8% 79.9%
1110926 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.55 48.0 3.28e-01 96.8% 81.6%
4943724 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 3.25e-01 95.7% 87.1%
4929596 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.99e-01 92.6% 51.0%
5081327 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 37.0 3.52e-01 90.4% 57.5%
4014908 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.55 44.0 3.68e-01 86.2% 68.1%
4030473 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.11e-01 95.7% 77.8%
3632804 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.55 46.0 3.10e-01 95.7% 57.6%
4993051 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 47.0 2.95e-01 97.9% 81.6%
3977885 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.54 46.0 3.18e-01 95.7% 75.7%
5037370 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.54 40.0 3.52e-01 79.8% 79.7%
3939750 5.1.4.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.53 46.0 2.96e-01 96.8% 54.1%
3961493 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.53 36.0 3.09e-01 72.3% 68.1%
2326343 10.1.1.47 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Polysacc_lyase_14 0.53 41.0 2.97e-01 83.0% 68.9%
6095 222.1.1.21 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlK 0.53 40.0 3.50e-01 79.8% 82.6%
3960103 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.52 37.0 3.26e-01 76.6% 76.6%
4476440 2004.1.1.1156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_23, SbcC_Walker_B 0.51 43.0 2.97e-01 96.8% 84.6%