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SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00328
Bact-VirSR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00328
Identity
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-141_170-228
Domain cluster:
rep: NC_031927.1__YP_009323164.1__BOW86_gp226__00231__D8-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04991.20 best | LicD | 45.0 | 2.00e-11 | 35.5% | 21.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wqkA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.69 | 52.0 | 5.48e-01 | 88.8% | 86.3% |
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.69 | 38.0 | 5.04e-01 | 77.7% | 100.0% |
| 3aqlA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.67 | 43.0 | 5.02e-01 | 78.7% | 89.3% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.65 | 24.0 | 3.58e-01 | 76.6% | 73.9% |
| 1ou5A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 43.0 | 4.99e-01 | 78.7% | 92.9% |
| 3h37A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 43.0 | 4.93e-01 | 78.7% | 91.0% |
| 1miwA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 42.0 | 5.05e-01 | 79.7% | 97.8% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.62 | 53.0 | 5.41e-01 | 88.3% | 100.0% |
| 1yrxC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 28.0 | 3.72e-01 | 72.1% | 80.8% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.56 | 25.0 | 3.51e-01 | 90.9% | 84.2% |
| 3vb0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 29.0 | 3.47e-01 | 93.4% | 82.2% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3989392 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.83 | 69.0 | 6.24e-01 | 85.3% | 100.0% |
| 3987477 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.83 | 70.0 | 6.18e-01 | 86.8% | 97.0% |
| 3164515 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.80 | 67.0 | 6.80e-01 | 86.3% | 97.9% |
| 3606375 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.79 | 76.0 | 6.92e-01 | 100.0% | 95.5% |
| 4954358 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.78 | 67.0 | 5.76e-01 | 88.3% | 89.5% |
| 4217299 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 72.0 | 6.67e-01 | 99.0% | 80.4% |
| 3782486 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.77 | 62.0 | 5.86e-01 | 81.7% | 87.1% |
| 3987679 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 68.0 | 6.59e-01 | 91.4% | 98.1% |
| 3788383 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 63.0 | 4.62e-01 | 83.8% | 41.8% |
| 3789145 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.77 | 63.0 | 5.03e-01 | 84.3% | 56.1% |
| 3788678 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 63.0 | 5.30e-01 | 84.3% | 69.7% |
| None | — | 0.76 | 72.0 | 6.88e-01 | 99.0% | 87.7% | |
| 3788241 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 64.0 | 4.71e-01 | 86.8% | 75.6% |
| 3701084 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 63.0 | 6.52e-01 | 90.9% | 89.4% |
| 4954405 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 70.0 | 6.57e-01 | 94.9% | 98.3% |
| 3710911 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.76 | 58.0 | 5.70e-01 | 78.2% | 94.3% |
| 3786092 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 62.0 | 4.92e-01 | 84.3% | 56.3% |
| 3389408 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 62.0 | 6.21e-01 | 84.8% | 86.0% |
| 3704072 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 64.0 | 6.32e-01 | 87.8% | 100.0% |
| 3175510 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.75 | 61.0 | 5.45e-01 | 83.8% | 77.4% |
| 3174305 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 61.0 | 4.51e-01 | 83.8% | 55.4% |
| 3550487 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.75 | 68.0 | 6.61e-01 | 94.9% | 86.5% |
| 3521617 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.74 | 65.0 | 6.26e-01 | 92.4% | 82.3% |
| 3518768 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.74 | 66.0 | 6.44e-01 | 95.9% | 86.2% |
| 3238463 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.73 | 66.0 | 6.50e-01 | 95.9% | 89.8% |
| 3585227 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.72 | 65.0 | 6.08e-01 | 95.9% | 78.7% |
| 3695136 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.72 | 66.0 | 6.18e-01 | 95.4% | 94.4% |
| 3631215 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.71 | 58.0 | 5.79e-01 | 83.2% | 100.0% |
| 3613704 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.70 | 63.0 | 5.89e-01 | 92.9% | 91.0% |
| 2092693 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.70 | 53.0 | 5.60e-01 | 89.8% | 86.4% |
| 3787843 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.69 | 62.0 | 4.83e-01 | 93.4% | 58.5% |
| 3242972 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 54.0 | 5.95e-01 | 88.8% | 100.0% |
| 4122066 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.66 | 49.0 | 5.56e-01 | 89.3% | 99.3% |
| 4973927 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.64 | 56.0 | 4.79e-01 | 92.9% | 90.2% |
| 4156614 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.63 | 42.0 | 5.03e-01 | 79.7% | 98.5% |
| 5029528 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 48.0 | 5.30e-01 | 93.4% | 97.5% |
| 4972768 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.63 | 59.0 | 5.18e-01 | 100.0% | 87.4% |
| 4974473 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.62 | 55.0 | 5.14e-01 | 93.9% | 98.8% |
| 5080470 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.62 | 55.0 | 5.18e-01 | 92.9% | 92.3% |
| 4051670 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.61 | 43.0 | 4.99e-01 | 78.7% | 99.3% |
| 4990267 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.61 | 52.0 | 5.37e-01 | 89.3% | 98.4% |
| 5080884 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 54.0 | 5.00e-01 | 93.4% | 94.7% |
| 4052877 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.61 | 42.0 | 4.97e-01 | 89.3% | 99.3% |
| 4999426 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.61 | 56.0 | 5.25e-01 | 97.5% | 88.9% |
| 5063941 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 53.0 | 5.00e-01 | 92.9% | 92.8% |
| 4958430 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 53.0 | 4.93e-01 | 92.4% | 96.2% |
| 4037081 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.57 | 44.0 | 4.58e-01 | 79.2% | 95.0% |
| 4997464 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 49.0 | 4.53e-01 | 89.8% | 80.0% |
| 5060886 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 47.0 | 5.00e-01 | 91.4% | 98.3% |
| 4983539 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 49.0 | 4.40e-01 | 90.4% | 81.5% |
| 3733520 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.56 | 43.0 | 4.46e-01 | 94.4% | 86.7% |
| 4963116 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.53 | 42.0 | 4.31e-01 | 81.7% | 91.1% |
| 3986529 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.53 | 27.0 | 3.72e-01 | 73.6% | 100.0% |
| 3272765 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.51 | 26.0 | 3.50e-01 | 83.8% | 97.9% |
| 5041540 | 316.2.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like › AbiEi_1 | 0.50 | 39.0 | 4.03e-01 | 80.7% | 90.0% |